RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 UBR4Q5T4S7 5183 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 IGHV3OR16-9A0A0B4J2B5 98 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.12□□□□□ -0.79
COL9A3-208ENST00000469802 SPAG11BQ08648 103 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 UQCC3Q6UW78 93 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 OR10D4PQ8NGN7 298 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 LINC01600Q96MT4 127 aa10.12□□□□□ -0.79
COL9A3-208ENST00000469802 GAGE2BQ13066 116 aa10.11□□□□□ -0.79
COL9A3-208ENST00000469802 ORMDL3Q8N138 153 aa10.11□□□□□ -0.79
COL9A3-208ENST00000469802 OPRPNQ99935 248 aaPredicted RBP10.11□□□□□ -0.79
COL9A3-208ENST00000469802 RNF151Q2KHN1 245 aa10.1□□□□□ -0.79
COL9A3-208ENST00000469802 Q6ZRP5 223 aa10.1□□□□□ -0.79
COL9A3-208ENST00000469802 A0A1W2PNN7 141 aa10.09□□□□□ -0.79
COL9A3-208ENST00000469802 MT-ND4LP03901 98 aa10.09□□□□□ -0.79
COL9A3-208ENST00000469802 SRSF9Q13242 221 aaKnown RBP eCLIP10.09□□□□□ -0.79
COL9A3-208ENST00000469802 SPINK6Q6UWN8 80 aa10.09□□□□□ -0.79
COL9A3-208ENST00000469802 ANAPC16Q96DE5 110 aa10.09□□□□□ -0.79
COL9A3-208ENST00000469802 PRELID3AQ96N28 172 aa10.09□□□□□ -0.79
COL9A3-208ENST00000469802 IFITM10A6NMD0 228 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 PRSS47A8MTI9 375 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 F8WDY8 70 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 TMEM136Q6ZRR5 245 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 ORAOV1Q8WV07 137 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 MRPL35Q9NZE8 188 aaKnown RBP10.08□□□□□ -0.8
COL9A3-208ENST00000469802 PYGO1Q9Y3Y4 419 aa10.08□□□□□ -0.8
COL9A3-208ENST00000469802 RPL18AQ02543 176 aaKnown RBP10.07□□□□□ -0.8
COL9A3-208ENST00000469802 LAMTOR2Q9Y2Q5 125 aa10.07□□□□□ -0.8
COL9A3-208ENST00000469802 IGLV4-3A0A075B6K6 122 aa10.06□□□□□ -0.8
COL9A3-208ENST00000469802 A0A0J9YXV3 536 aa10.06□□□□□ -0.8
COL9A3-208ENST00000469802 TMEM218A2RU14 115 aa10.06□□□□□ -0.8
COL9A3-208ENST00000469802 IFI27P40305 119 aaPredicted RBP10.06□□□□□ -0.8
COL9A3-208ENST00000469802 C9orf116Q5BN46 136 aaPredicted RBP10.06□□□□□ -0.8
COL9A3-208ENST00000469802 RAB5AP20339 215 aa10.05□□□□□ -0.8
COL9A3-208ENST00000469802 COMMD7Q86VX2 200 aa10.05□□□□□ -0.8
COL9A3-208ENST00000469802 A0A087WZ39 114 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 TGIF2-C20orf24A0A0A6YYL0 155 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 NDUFA1O15239 70 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 LINC00242Q5T6M2 205 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 C10orf25Q5T742 122 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 REG3GQ6UW15 175 aa10.04□□□□□ -0.8
COL9A3-208ENST00000469802 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 ADCYAP1P18509 176 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 KRTAP10-8P60410 259 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 KIAA0087Q14695 138 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 TMEM141Q96I45 108 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 SEC11CQ9BY50 192 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 MAP1LC3AQ9H492 121 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 C6orf48Q9UBA6 75 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 PSORS1C2Q9UIG4 136 aa10.03□□□□□ -0.8
COL9A3-208ENST00000469802 IMMP2LQ96T52 175 aa10.02□□□□□ -0.81
COL9A3-208ENST00000469802 ODF1Q14990 250 aa10.01□□□□□ -0.81
COL9A3-208ENST00000469802 UNQ6190/PRO20217Q6UXQ8 127 aa10.01□□□□□ -0.81
COL9A3-208ENST00000469802 LINC00173Q6ZV60 143 aa10.01□□□□□ -0.81
COL9A3-208ENST00000469802 PHF5AQ7RTV0 110 aaKnown RBP10.01□□□□□ -0.81
COL9A3-208ENST00000469802 Q8N8P6 123 aa10.01□□□□□ -0.81
COL9A3-208ENST00000469802 LOC389332A0A1B0GUA5 103 aa10□□□□□ -0.81
COL9A3-208ENST00000469802 UBE2D1P51668 147 aa10□□□□□ -0.81
COL9A3-208ENST00000469802 CTDSP1Q9GZU7 261 aa10□□□□□ -0.81
COL9A3-208ENST00000469802 CYSLTR1Q9Y271 337 aa10□□□□□ -0.81
COL9A3-208ENST00000469802 MT-ND6P03923 174 aa9.99□□□□□ -0.81
COL9A3-208ENST00000469802 C2orf66Q6UXQ4 117 aa9.99□□□□□ -0.81
COL9A3-208ENST00000469802 TEX43Q6ZNM6 134 aa9.99□□□□□ -0.81
COL9A3-208ENST00000469802 LINC01561Q8N1V8 128 aa9.99□□□□□ -0.81
COL9A3-208ENST00000469802 AMELXQ99217 191 aa9.99□□□□□ -0.81
COL9A3-208ENST00000469802 LRP2P98164 4655 aa9.98□□□□□ -0.81
COL9A3-208ENST00000469802 FAM168BA1KXE4 195 aa9.98□□□□□ -0.81
COL9A3-208ENST00000469802 K7EMI3 77 aa9.98□□□□□ -0.81
COL9A3-208ENST00000469802 NPSP0C0P6 89 aa9.98□□□□□ -0.81
COL9A3-208ENST00000469802 TRBV30A0A0K0K1B3 111 aa9.97□□□□□ -0.81
COL9A3-208ENST00000469802 ORMDL2Q53FV1 153 aa9.97□□□□□ -0.81
COL9A3-208ENST00000469802 FAM19A3Q7Z5A8 133 aa9.97□□□□□ -0.81
COL9A3-208ENST00000469802 KRTAP7-1Q8IUC3 87 aa9.97□□□□□ -0.81
COL9A3-208ENST00000469802 IGIPA6NJ69 53 aa9.96□□□□□ -0.82
COL9A3-208ENST00000469802 C1orf137Q5JT78 98 aa9.96□□□□□ -0.82
COL9A3-208ENST00000469802 ZC2HC1BQ5TFG8 222 aa9.96□□□□□ -0.82
COL9A3-208ENST00000469802 KRTAP11-1Q8IUC1 163 aa9.96□□□□□ -0.82
COL9A3-208ENST00000469802 C2orf88Q9BSF0 95 aa9.96□□□□□ -0.82
COL9A3-208ENST00000469802 TRAV9-1A0A075B6T8 112 aa9.95□□□□□ -0.82
COL9A3-208ENST00000469802 S100PP25815 95 aa9.95□□□□□ -0.82
COL9A3-208ENST00000469802 C10orf91Q5T1B1 145 aa9.95□□□□□ -0.82
COL9A3-208ENST00000469802 C2orf82Q6UX34 121 aa9.95□□□□□ -0.82
COL9A3-208ENST00000469802 Q6ZN92 141 aa9.95□□□□□ -0.82
COL9A3-208ENST00000469802 NXT2Q9NPJ8 142 aaKnown RBP9.95□□□□□ -0.82
COL9A3-208ENST00000469802 CARHSP1Q9Y2V2 147 aaKnown RBP9.95□□□□□ -0.82
COL9A3-208ENST00000469802 RHEBQ15382 184 aa9.94□□□□□ -0.82
COL9A3-208ENST00000469802 GAGE2EQ4V326 116 aa9.94□□□□□ -0.82
COL9A3-208ENST00000469802 FAM19A5Q7Z5A7 132 aaPredicted RBP9.94□□□□□ -0.82
COL9A3-208ENST00000469802 GAGE2DQ9UEU5 116 aa9.94□□□□□ -0.82
COL9A3-208ENST00000469802 NDUFC2-KCTD14E9PQ53 114 aa9.93□□□□□ -0.82
COL9A3-208ENST00000469802 IGLV7-43P04211 117 aa9.93□□□□□ -0.82
COL9A3-208ENST00000469802 VCX2Q9H322 139 aa9.93□□□□□ -0.82
COL9A3-208ENST00000469802 C9orf129Q5T035 196 aaKnown RBP9.92□□□□□ -0.82
COL9A3-208ENST00000469802 M0QXV9 152 aa9.91□□□□□ -0.82
COL9A3-208ENST00000469802 NDUFA5Q16718 116 aa9.91□□□□□ -0.82
COL9A3-208ENST00000469802 PACRGQ96M98 296 aaPredicted RBP9.91□□□□□ -0.82
COL9A3-208ENST00000469802 TIMM17AQ99595 171 aa9.91□□□□□ -0.82
COL9A3-208ENST00000469802 Q8IZM0 81 aa9.9□□□□□ -0.82
COL9A3-208ENST00000469802 DIRC1Q969H9 104 aa9.9□□□□□ -0.82
COL9A3-208ENST00000469802 TOMM6Q96B49 74 aa9.9□□□□□ -0.82
COL9A3-208ENST00000469802 RPS10P5Q9NQ39 176 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms