RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 C1orf137Q5JT78 98 aa12.92□□□□□ -0.34
COL9A3-207ENST00000467819 SMIM2Q9BVW6 85 aa12.92□□□□□ -0.34
COL9A3-207ENST00000467819 A0A1B0GW15 77 aa12.91□□□□□ -0.34
COL9A3-207ENST00000467819 TCAPO15273 167 aa12.91□□□□□ -0.34
COL9A3-207ENST00000467819 RNF151Q2KHN1 245 aa12.91□□□□□ -0.34
COL9A3-207ENST00000467819 FAM104AQ969W3 186 aa12.91□□□□□ -0.34
COL9A3-207ENST00000467819 D6R8Y8 96 aa12.9□□□□□ -0.34
COL9A3-207ENST00000467819 MRPL54Q6P161 138 aaKnown RBP12.9□□□□□ -0.34
COL9A3-207ENST00000467819 SPANXA1Q9NS26 97 aa12.9□□□□□ -0.34
COL9A3-207ENST00000467819 IFITM10A6NMD0 228 aa12.89□□□□□ -0.35
COL9A3-207ENST00000467819 MRPL35Q9NZE8 188 aaKnown RBP12.89□□□□□ -0.35
COL9A3-207ENST00000467819 IGHV3OR16-9A0A0B4J2B5 98 aa12.88□□□□□ -0.35
COL9A3-207ENST00000467819 NPYP01303 97 aa12.88□□□□□ -0.35
COL9A3-207ENST00000467819 SRSF3P84103 164 aaKnown RBP12.88□□□□□ -0.35
COL9A3-207ENST00000467819 NDUFA1O15239 70 aa12.87□□□□□ -0.35
COL9A3-207ENST00000467819 HBBP68871 147 aa12.87□□□□□ -0.35
COL9A3-207ENST00000467819 MRPS36P82909 103 aaKnown RBP12.87□□□□□ -0.35
COL9A3-207ENST00000467819 C10orf25Q5T742 122 aa12.87□□□□□ -0.35
COL9A3-207ENST00000467819 IMMP2LQ96T52 175 aa12.87□□□□□ -0.35
COL9A3-207ENST00000467819 FAM168BA1KXE4 195 aa12.86□□□□□ -0.35
COL9A3-207ENST00000467819 F8W036 122 aa12.86□□□□□ -0.35
COL9A3-207ENST00000467819 S100A8P05109 93 aa12.86□□□□□ -0.35
COL9A3-207ENST00000467819 UNQ6190/PRO20217Q6UXQ8 127 aa12.86□□□□□ -0.35
COL9A3-207ENST00000467819 F8WDY8 70 aa12.85□□□□□ -0.35
COL9A3-207ENST00000467819 PEA15Q15121 130 aa12.85□□□□□ -0.35
COL9A3-207ENST00000467819 A0A1B0GXF2 115 aa12.84□□□□□ -0.35
COL9A3-207ENST00000467819 FAM19A5Q7Z5A7 132 aaPredicted RBP12.84□□□□□ -0.35
COL9A3-207ENST00000467819 C6orf48Q9UBA6 75 aa12.84□□□□□ -0.35
COL9A3-207ENST00000467819 A0A087WZ39 114 aa12.83□□□□□ -0.36
COL9A3-207ENST00000467819 TGIF2-C20orf24A0A0A6YYL0 155 aa12.83□□□□□ -0.36
COL9A3-207ENST00000467819 IGLV7-43P04211 117 aa12.83□□□□□ -0.36
COL9A3-207ENST00000467819 GAGE2EQ4V326 116 aa12.83□□□□□ -0.36
COL9A3-207ENST00000467819 GAGE2DQ9UEU5 116 aa12.83□□□□□ -0.36
COL9A3-207ENST00000467819 LPAP08519 4548 aa12.82□□□□□ -0.36
COL9A3-207ENST00000467819 KRTAP11-1Q8IUC1 163 aa12.82□□□□□ -0.36
COL9A3-207ENST00000467819 DIRC1Q969H9 104 aa12.82□□□□□ -0.36
COL9A3-207ENST00000467819 PPBPP02775 128 aa12.81□□□□□ -0.36
COL9A3-207ENST00000467819 TLX1NBP0CAT3 122 aa12.81□□□□□ -0.36
COL9A3-207ENST00000467819 IFI27P40305 119 aaPredicted RBP12.81□□□□□ -0.36
COL9A3-207ENST00000467819 RAB5AP20339 215 aa12.8□□□□□ -0.36
COL9A3-207ENST00000467819 ORMDL3Q8N138 153 aa12.8□□□□□ -0.36
COL9A3-207ENST00000467819 PRR26Q8N8Z3 221 aa12.8□□□□□ -0.36
COL9A3-207ENST00000467819 PRELID3AQ96N28 172 aa12.79□□□□□ -0.36
COL9A3-207ENST00000467819 SMDT1Q9H4I9 107 aa12.79□□□□□ -0.36
COL9A3-207ENST00000467819 IGLV4-3A0A075B6K6 122 aa12.78□□□□□ -0.36
COL9A3-207ENST00000467819 A0A1B0GVG6 124 aa12.78□□□□□ -0.36
COL9A3-207ENST00000467819 KIAA0087Q14695 138 aa12.78□□□□□ -0.36
COL9A3-207ENST00000467819 TMEM136Q6ZRR5 245 aa12.78□□□□□ -0.36
COL9A3-207ENST00000467819 H0Y9J4 135 aa12.77□□□□□ -0.37
COL9A3-207ENST00000467819 LINC00242Q5T6M2 205 aa12.77□□□□□ -0.37
COL9A3-207ENST00000467819 PYGO1Q9Y3Y4 419 aa12.77□□□□□ -0.37
COL9A3-207ENST00000467819 M0QXV9 152 aa12.76□□□□□ -0.37
COL9A3-207ENST00000467819 C2orf82Q6UX34 121 aa12.76□□□□□ -0.37
COL9A3-207ENST00000467819 KRTAP7-1Q8IUC3 87 aa12.76□□□□□ -0.37
COL9A3-207ENST00000467819 TMEM141Q96I45 108 aa12.76□□□□□ -0.37
COL9A3-207ENST00000467819 LOC389332A0A1B0GUA5 103 aa12.75□□□□□ -0.37
COL9A3-207ENST00000467819 UBE2BP63146 152 aa12.75□□□□□ -0.37
COL9A3-207ENST00000467819 ATP5L2Q7Z4Y8 100 aa12.75□□□□□ -0.37
COL9A3-207ENST00000467819 TRBV30A0A0K0K1B3 111 aa12.73□□□□□ -0.37
COL9A3-207ENST00000467819 TEX43Q6ZNM6 134 aa12.73□□□□□ -0.37
COL9A3-207ENST00000467819 PACRGQ96M98 296 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-207ENST00000467819 NDUFC2-KCTD14E9PQ53 114 aa12.72□□□□□ -0.37
COL9A3-207ENST00000467819 UBE2D1P51668 147 aa12.72□□□□□ -0.37
COL9A3-207ENST00000467819 ZC2HC1BQ5TFG8 222 aa12.72□□□□□ -0.37
COL9A3-207ENST00000467819 MAP1LC3AQ9H492 121 aa12.72□□□□□ -0.37
COL9A3-207ENST00000467819 C9orf129Q5T035 196 aaKnown RBP12.71□□□□□ -0.37
COL9A3-207ENST00000467819 C2orf88Q9BSF0 95 aa12.71□□□□□ -0.37
COL9A3-207ENST00000467819 PRSS47A8MTI9 375 aa12.69□□□□□ -0.38
COL9A3-207ENST00000467819 C2orf66Q6UXQ4 117 aa12.69□□□□□ -0.38
COL9A3-207ENST00000467819 Q6ZN92 141 aa12.69□□□□□ -0.38
COL9A3-207ENST00000467819 CYSLTR1Q9Y271 337 aa12.69□□□□□ -0.38
COL9A3-207ENST00000467819 LAMTOR2Q9Y2Q5 125 aa12.69□□□□□ -0.38
COL9A3-207ENST00000467819 IGLV1-50A0A075B6I6 118 aa12.68□□□□□ -0.38
COL9A3-207ENST00000467819 KRTAP1-4P0C5Y4 121 aa12.68□□□□□ -0.38
COL9A3-207ENST00000467819 LINC00173Q6ZV60 143 aa12.68□□□□□ -0.38
COL9A3-207ENST00000467819 LINC01561Q8N1V8 128 aa12.68□□□□□ -0.38
COL9A3-207ENST00000467819 TOMM7Q9P0U1 55 aa12.68□□□□□ -0.38
COL9A3-207ENST00000467819 PRSS2P07478 247 aa12.67□□□□□ -0.38
COL9A3-207ENST00000467819 Q8N8P6 123 aa12.67□□□□□ -0.38
COL9A3-207ENST00000467819 VCX2Q9H322 139 aa12.66□□□□□ -0.38
COL9A3-207ENST00000467819 CKS1BP61024 79 aa12.65□□□□□ -0.38
COL9A3-207ENST00000467819 LINC00469Q8N7U9 141 aa12.65□□□□□ -0.38
COL9A3-207ENST00000467819 AMELXQ99217 191 aa12.65□□□□□ -0.38
COL9A3-207ENST00000467819 ORMDL2Q53FV1 153 aa12.64□□□□□ -0.39
COL9A3-207ENST00000467819 C6orf226Q5I0X4 101 aa12.63□□□□□ -0.39
COL9A3-207ENST00000467819 ALKBH7Q9BT30 221 aaPredicted RBP12.62□□□□□ -0.39
COL9A3-207ENST00000467819 IGIPA6NJ69 53 aa12.61□□□□□ -0.39
COL9A3-207ENST00000467819 MT-ND4LP03901 98 aa12.61□□□□□ -0.39
COL9A3-207ENST00000467819 PNRC1Q12796 327 aaPredicted RBP12.61□□□□□ -0.39
COL9A3-207ENST00000467819 Q8IZM0 81 aa12.61□□□□□ -0.39
COL9A3-207ENST00000467819 ANAPC16Q96DE5 110 aa12.61□□□□□ -0.39
COL9A3-207ENST00000467819 XAGE1AQ9HD64 81 aa12.61□□□□□ -0.39
COL9A3-207ENST00000467819 RPL13AP40429 203 aaKnown RBP12.6□□□□□ -0.39
COL9A3-207ENST00000467819 C22orf24Q9Y442 160 aa12.6□□□□□ -0.39
COL9A3-207ENST00000467819 NPSP0C0P6 89 aa12.59□□□□□ -0.39
COL9A3-207ENST00000467819 FAM19A3Q7Z5A8 133 aa12.59□□□□□ -0.39
COL9A3-207ENST00000467819 ZNF861PO60384 105 aa12.58□□□□□ -0.4
COL9A3-207ENST00000467819 HERVK_113P63121 156 aa12.58□□□□□ -0.4
COL9A3-207ENST00000467819 PRR4Q16378 134 aa12.58□□□□□ -0.4
COL9A3-207ENST00000467819 CDKN2A-AS1Q9UH64 79 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms