RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 OR10D4PQ8NGN7 298 aa11.81□□□□□ -0.52
COL9A3-206ENST00000466532 PEA15Q15121 130 aa11.8□□□□□ -0.52
COL9A3-206ENST00000466532 ORAOV1Q8WV07 137 aa11.8□□□□□ -0.52
COL9A3-206ENST00000466532 F8W036 122 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 MT-ND6P03923 174 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 S100A8P05109 93 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 HBBP68871 147 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 RNF151Q2KHN1 245 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 FAM104AQ969W3 186 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 SPANXA1Q9NS26 97 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 PSORS1C2Q9UIG4 136 aa11.79□□□□□ -0.52
COL9A3-206ENST00000466532 NPYP01303 97 aa11.78□□□□□ -0.52
COL9A3-206ENST00000466532 PHF5AQ7RTV0 110 aaKnown RBP11.78□□□□□ -0.52
COL9A3-206ENST00000466532 IGHV3OR16-9A0A0B4J2B5 98 aa11.77□□□□□ -0.53
COL9A3-206ENST00000466532 MRPS36P82909 103 aaKnown RBP11.77□□□□□ -0.53
COL9A3-206ENST00000466532 MRPL35Q9NZE8 188 aaKnown RBP11.77□□□□□ -0.53
COL9A3-206ENST00000466532 A0A1B0GXF2 115 aa11.76□□□□□ -0.53
COL9A3-206ENST00000466532 IFITM10A6NMD0 228 aa11.76□□□□□ -0.53
COL9A3-206ENST00000466532 SMDT1Q9H4I9 107 aa11.76□□□□□ -0.53
COL9A3-206ENST00000466532 RNF213Q63HN8 5207 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 A0A1B0GVG6 124 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 F8WDY8 70 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 NDUFA1O15239 70 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 PPBPP02775 128 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 C1orf137Q5JT78 98 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 IMMP2LQ96T52 175 aa11.75□□□□□ -0.53
COL9A3-206ENST00000466532 C10orf25Q5T742 122 aa11.73□□□□□ -0.53
COL9A3-206ENST00000466532 TGIF2-C20orf24A0A0A6YYL0 155 aa11.72□□□□□ -0.53
COL9A3-206ENST00000466532 RAB5AP20339 215 aa11.72□□□□□ -0.53
COL9A3-206ENST00000466532 IFI27P40305 119 aaPredicted RBP11.72□□□□□ -0.53
COL9A3-206ENST00000466532 UNQ6190/PRO20217Q6UXQ8 127 aa11.72□□□□□ -0.53
COL9A3-206ENST00000466532 ORMDL3Q8N138 153 aa11.72□□□□□ -0.53
COL9A3-206ENST00000466532 FAM168BA1KXE4 195 aa11.71□□□□□ -0.53
COL9A3-206ENST00000466532 TMEM136Q6ZRR5 245 aa11.71□□□□□ -0.53
COL9A3-206ENST00000466532 PRELID3AQ96N28 172 aa11.71□□□□□ -0.53
COL9A3-206ENST00000466532 C6orf48Q9UBA6 75 aa11.71□□□□□ -0.53
COL9A3-206ENST00000466532 TLX1NBP0CAT3 122 aa11.7□□□□□ -0.54
COL9A3-206ENST00000466532 ATP5L2Q7Z4Y8 100 aa11.7□□□□□ -0.54
COL9A3-206ENST00000466532 FAM19A5Q7Z5A7 132 aaPredicted RBP11.69□□□□□ -0.54
COL9A3-206ENST00000466532 PYGO1Q9Y3Y4 419 aa11.69□□□□□ -0.54
COL9A3-206ENST00000466532 IGLV4-3A0A075B6K6 122 aa11.68□□□□□ -0.54
COL9A3-206ENST00000466532 A0A087WZ39 114 aa11.68□□□□□ -0.54
COL9A3-206ENST00000466532 IGLV7-43P04211 117 aa11.68□□□□□ -0.54
COL9A3-206ENST00000466532 GAGE2EQ4V326 116 aa11.68□□□□□ -0.54
COL9A3-206ENST00000466532 GAGE2DQ9UEU5 116 aa11.68□□□□□ -0.54
COL9A3-206ENST00000466532 KIAA0087Q14695 138 aa11.67□□□□□ -0.54
COL9A3-206ENST00000466532 LINC00242Q5T6M2 205 aa11.67□□□□□ -0.54
COL9A3-206ENST00000466532 KRTAP11-1Q8IUC1 163 aa11.67□□□□□ -0.54
COL9A3-206ENST00000466532 TMEM141Q96I45 108 aa11.67□□□□□ -0.54
COL9A3-206ENST00000466532 DIRC1Q969H9 104 aa11.66□□□□□ -0.54
COL9A3-206ENST00000466532 LOC389332A0A1B0GUA5 103 aa11.65□□□□□ -0.54
COL9A3-206ENST00000466532 TEX43Q6ZNM6 134 aa11.65□□□□□ -0.54
COL9A3-206ENST00000466532 PRSS47A8MTI9 375 aa11.64□□□□□ -0.55
COL9A3-206ENST00000466532 C2orf82Q6UX34 121 aa11.64□□□□□ -0.55
COL9A3-206ENST00000466532 MAP1LC3AQ9H492 121 aa11.64□□□□□ -0.55
COL9A3-206ENST00000466532 LAMTOR2Q9Y2Q5 125 aa11.64□□□□□ -0.55
COL9A3-206ENST00000466532 TRBV30A0A0K0K1B3 111 aa11.63□□□□□ -0.55
COL9A3-206ENST00000466532 H0Y9J4 135 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 M0QXV9 152 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 UBE2D1P51668 147 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 KRTAP7-1Q8IUC3 87 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 PRR26Q8N8Z3 221 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 PACRGQ96M98 296 aaPredicted RBP11.62□□□□□ -0.55
COL9A3-206ENST00000466532 C2orf88Q9BSF0 95 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 CYSLTR1Q9Y271 337 aa11.62□□□□□ -0.55
COL9A3-206ENST00000466532 UBE2BP63146 152 aa11.61□□□□□ -0.55
COL9A3-206ENST00000466532 ZC2HC1BQ5TFG8 222 aa11.61□□□□□ -0.55
COL9A3-206ENST00000466532 C2orf66Q6UXQ4 117 aa11.61□□□□□ -0.55
COL9A3-206ENST00000466532 Q8N8P6 123 aa11.61□□□□□ -0.55
COL9A3-206ENST00000466532 NDUFC2-KCTD14E9PQ53 114 aa11.6□□□□□ -0.55
COL9A3-206ENST00000466532 Q6ZN92 141 aa11.6□□□□□ -0.55
COL9A3-206ENST00000466532 LINC01561Q8N1V8 128 aa11.6□□□□□ -0.55
COL9A3-206ENST00000466532 PNRC1Q12796 327 aaPredicted RBP11.59□□□□□ -0.55
COL9A3-206ENST00000466532 C9orf129Q5T035 196 aaKnown RBP11.59□□□□□ -0.55
COL9A3-206ENST00000466532 LINC00173Q6ZV60 143 aa11.59□□□□□ -0.55
COL9A3-206ENST00000466532 ANAPC16Q96DE5 110 aa11.59□□□□□ -0.55
COL9A3-206ENST00000466532 LPAP08519 4548 aa11.59□□□□□ -0.55
COL9A3-206ENST00000466532 ORMDL2Q53FV1 153 aa11.58□□□□□ -0.56
COL9A3-206ENST00000466532 AMELXQ99217 191 aa11.58□□□□□ -0.56
COL9A3-206ENST00000466532 VCX2Q9H322 139 aa11.58□□□□□ -0.56
COL9A3-206ENST00000466532 MT-ND4LP03901 98 aa11.57□□□□□ -0.56
COL9A3-206ENST00000466532 PRSS2P07478 247 aa11.57□□□□□ -0.56
COL9A3-206ENST00000466532 TOMM7Q9P0U1 55 aa11.57□□□□□ -0.56
COL9A3-206ENST00000466532 IGLV1-50A0A075B6I6 118 aa11.55□□□□□ -0.56
COL9A3-206ENST00000466532 CKS1BP61024 79 aa11.55□□□□□ -0.56
COL9A3-206ENST00000466532 IGIPA6NJ69 53 aa11.54□□□□□ -0.56
COL9A3-206ENST00000466532 K7EMI3 77 aa11.54□□□□□ -0.56
COL9A3-206ENST00000466532 NPSP0C0P6 89 aa11.54□□□□□ -0.56
COL9A3-206ENST00000466532 KRTAP1-4P0C5Y4 121 aa11.54□□□□□ -0.56
COL9A3-206ENST00000466532 FAM19A3Q7Z5A8 133 aa11.54□□□□□ -0.56
COL9A3-206ENST00000466532 C6orf226Q5I0X4 101 aa11.53□□□□□ -0.56
COL9A3-206ENST00000466532 Q8IZM0 81 aa11.53□□□□□ -0.56
COL9A3-206ENST00000466532 LINC00469Q8N7U9 141 aa11.52□□□□□ -0.57
COL9A3-206ENST00000466532 ALKBH7Q9BT30 221 aaPredicted RBP11.52□□□□□ -0.57
COL9A3-206ENST00000466532 CTDSP1Q9GZU7 261 aa11.52□□□□□ -0.57
COL9A3-206ENST00000466532 NXT2Q9NPJ8 142 aaKnown RBP11.52□□□□□ -0.57
COL9A3-206ENST00000466532 RAB14P61106 215 aa11.5□□□□□ -0.57
COL9A3-206ENST00000466532 HERVK_113P63121 156 aa11.5□□□□□ -0.57
COL9A3-206ENST00000466532 SEC11AP67812 179 aa11.5□□□□□ -0.57
COL9A3-206ENST00000466532 PAPPA-AS1Q5QFB9 102 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms