RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 IGHV3-64A0A075B6Q5 118 aa8.4□□□□□ -1.06
COL28A1-206ENST00000465339 TRAV13-1A0A0B4J241 112 aa8.4□□□□□ -1.06
COL28A1-206ENST00000465339 IFI27P40305 119 aaPredicted RBP8.4□□□□□ -1.06
COL28A1-206ENST00000465339 RNASE13Q5GAN3 156 aaKnown RBP8.4□□□□□ -1.06
COL28A1-206ENST00000465339 SCXQ7RTU7 201 aa8.4□□□□□ -1.06
COL28A1-206ENST00000465339 G0S2P27469 103 aa8.39□□□□□ -1.07
COL28A1-206ENST00000465339 NDUFA5Q16718 116 aa8.39□□□□□ -1.07
COL28A1-206ENST00000465339 HIGD2BQ4VC39 106 aa8.39□□□□□ -1.07
COL28A1-206ENST00000465339 ORMDL2Q53FV1 153 aa8.39□□□□□ -1.07
COL28A1-206ENST00000465339 FAM104AQ969W3 186 aa8.39□□□□□ -1.07
COL28A1-206ENST00000465339 COX7A2LO14548 114 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 APOC3P02656 99 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 MT-ND6P03923 174 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 KIAA1644Q3SXP7 199 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 CIRBP-AS1Q8TBR5 109 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 OPRPNQ99935 248 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-206ENST00000465339 CYSLTR1Q9Y271 337 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 DNAH8Q96JB1 4490 aa8.38□□□□□ -1.07
COL28A1-206ENST00000465339 SNAPINO95295 136 aa8.37□□□□□ -1.07
COL28A1-206ENST00000465339 SVBPQ8N300 66 aa8.37□□□□□ -1.07
COL28A1-206ENST00000465339 SRRM2Q9UQ35 2752 aaKnown RBP8.37□□□□□ -1.07
COL28A1-206ENST00000465339 IFITM10A6NMD0 228 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 APOMO95445 188 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 PLA2G1BP04054 148 aaKnown RBP8.36□□□□□ -1.07
COL28A1-206ENST00000465339 NPSP0C0P6 89 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 LCE3BQ5TA77 95 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 C2orf66Q6UXQ4 117 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 TMEM141Q96I45 108 aa8.36□□□□□ -1.07
COL28A1-206ENST00000465339 IGLV4-3A0A075B6K6 122 aa8.35□□□□□ -1.07
COL28A1-206ENST00000465339 INAFM2P0DMQ5 153 aa8.35□□□□□ -1.07
COL28A1-206ENST00000465339 CIRBPQ14011 172 aaKnown RBP8.35□□□□□ -1.07
COL28A1-206ENST00000465339 C5orf38Q86SI9 138 aa8.35□□□□□ -1.07
COL28A1-206ENST00000465339 PRSS3P2Q8NHM4 247 aa8.35□□□□□ -1.07
COL28A1-206ENST00000465339 ALKBH7Q9BT30 221 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-206ENST00000465339 PKIGQ9Y2B9 76 aa8.35□□□□□ -1.07
COL28A1-206ENST00000465339 IGHV3OR16-9A0A0B4J2B5 98 aa8.34□□□□□ -1.07
COL28A1-206ENST00000465339 FABP9Q0Z7S8 132 aa8.34□□□□□ -1.07
COL28A1-206ENST00000465339 Q6ZN92 141 aa8.34□□□□□ -1.07
COL28A1-206ENST00000465339 TEX43Q6ZNM6 134 aa8.34□□□□□ -1.07
COL28A1-206ENST00000465339 DPH3Q96FX2 82 aa8.34□□□□□ -1.07
COL28A1-206ENST00000465339 LINC01549A6NIU2 74 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 COX6A2Q02221 97 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 SYCNQ0VAF6 134 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 LINC00526Q96FQ7 95 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 CARD19Q96LW7 228 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 VCX2Q9H322 139 aa8.33□□□□□ -1.08
COL28A1-206ENST00000465339 IGLV4-69A0A075B6H9 119 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 TGIF2-C20orf24A0A0A6YYL0 155 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 LINC01546A6NGU7 62 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 IGIPA6NJ69 53 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 PANO1I0J062 215 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 PAPPA-AS1Q5QFB9 102 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 OR10D4PQ8NGN7 298 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 C2orf88Q9BSF0 95 aa8.32□□□□□ -1.08
COL28A1-206ENST00000465339 LINC00242Q5T6M2 205 aa8.31□□□□□ -1.08
COL28A1-206ENST00000465339 TOMM6Q96B49 74 aa8.31□□□□□ -1.08
COL28A1-206ENST00000465339 C2orf48Q96LS8 159 aa8.31□□□□□ -1.08
COL28A1-206ENST00000465339 AMELXQ99217 191 aa8.31□□□□□ -1.08
COL28A1-206ENST00000465339 TRAPPC1Q9Y5R8 145 aa8.31□□□□□ -1.08
COL28A1-206ENST00000465339 FAT1Q14517 4588 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 ABCA13Q86UQ4 5058 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 F8WDY8 70 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 UBE2D1P51668 147 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 ERASQ7Z444 233 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 SPACA4Q8TDM5 124 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 CAMK2N2Q96S95 79 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 TIMM17AQ99595 171 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 LINC00474Q9P2X8 69 aa8.3□□□□□ -1.08
COL28A1-206ENST00000465339 A0A087WYN8 130 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 A0A087WZ39 114 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 CHTF8P0CG12 524 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 SPAG11BQ08648 103 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 LINC00173Q6ZV60 143 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 FA2HQ7L5A8 372 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 ORAOV1Q8WV07 137 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 SCGB3A1Q96QR1 104 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 SMCO4Q9NRQ5 59 aa8.29□□□□□ -1.08
COL28A1-206ENST00000465339 VPS13BQ7Z7G8 4022 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 SEC11AP67812 179 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 Q6ZRU5 148 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 FAM19A3Q7Z5A8 133 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 LINC01561Q8N1V8 128 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 PLAC8Q9NZF1 115 aa8.28□□□□□ -1.08
COL28A1-206ENST00000465339 A0A096LNI7 61 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 IGKV2-24A0A0C4DH68 120 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 LOC107984640A0A0U1RRK4 108 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 PTTG1IPP53801 180 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 RNF151Q2KHN1 245 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 MAJINQ3KP22 176 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 ZC2HC1BQ5TFG8 222 aa8.27□□□□□ -1.09
COL28A1-206ENST00000465339 B5MCH6 92 aa8.26□□□□□ -1.09
COL28A1-206ENST00000465339 YPEL4Q96NS1 127 aa8.26□□□□□ -1.09
COL28A1-206ENST00000465339 NDUFA1O15239 70 aa8.25□□□□□ -1.09
COL28A1-206ENST00000465339 LINC00614P0C842 121 aa8.25□□□□□ -1.09
COL28A1-206ENST00000465339 KRTAP10-4P60372 401 aaPredicted RBP8.25□□□□□ -1.09
COL28A1-206ENST00000465339 RPL37AP61513 92 aaKnown RBP8.25□□□□□ -1.09
COL28A1-206ENST00000465339 HERVK_113P63121 156 aa8.25□□□□□ -1.09
COL28A1-206ENST00000465339 STPG4Q8N801 248 aa8.25□□□□□ -1.09
COL28A1-206ENST00000465339 C18orf32Q8TCD1 76 aa8.25□□□□□ -1.09
COL28A1-206ENST00000465339 MRPL35Q9NZE8 188 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms