RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 OR10D4PQ8NGN7 298 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 C2orf48Q96LS8 159 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 PRELID3AQ96N28 172 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 PLA2G2DQ9UNK4 145 aa8.74□□□□□ -1.01
USP4-206ENST00000461553 RPL18AQ02543 176 aaKnown RBP8.73□□□□□ -1.01
USP4-206ENST00000461553 TMEM136Q6ZRR5 245 aa8.73□□□□□ -1.01
USP4-206ENST00000461553 ORAOV1Q8WV07 137 aa8.73□□□□□ -1.01
USP4-206ENST00000461553 ANAPC16Q96DE5 110 aa8.72□□□□□ -1.01
USP4-206ENST00000461553 LAMTOR2Q9Y2Q5 125 aa8.72□□□□□ -1.01
USP4-206ENST00000461553 TGIF2-C20orf24A0A0A6YYL0 155 aa8.71□□□□□ -1.02
USP4-206ENST00000461553 MT-ND4LP03901 98 aa8.71□□□□□ -1.02
USP4-206ENST00000461553 MT1HL1P0DM35 61 aa8.71□□□□□ -1.02
USP4-206ENST00000461553 OPRPNQ99935 248 aaPredicted RBP8.71□□□□□ -1.02
USP4-206ENST00000461553 MAP1LC3AQ9H492 121 aa8.71□□□□□ -1.02
USP4-206ENST00000461553 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.7□□□□□ -1.02
USP4-206ENST00000461553 NDUFA1O15239 70 aa8.7□□□□□ -1.02
USP4-206ENST00000461553 Q6ZRP5 223 aa8.7□□□□□ -1.02
USP4-206ENST00000461553 FAM104AQ969W3 186 aa8.7□□□□□ -1.02
USP4-206ENST00000461553 IGHV3OR16-9A0A0B4J2B5 98 aa8.69□□□□□ -1.02
USP4-206ENST00000461553 F8WDY8 70 aa8.69□□□□□ -1.02
USP4-206ENST00000461553 IGLV4-3A0A075B6K6 122 aa8.68□□□□□ -1.02
USP4-206ENST00000461553 LOC389332A0A1B0GUA5 103 aa8.68□□□□□ -1.02
USP4-206ENST00000461553 RNF151Q2KHN1 245 aa8.68□□□□□ -1.02
USP4-206ENST00000461553 TMEM141Q96I45 108 aa8.68□□□□□ -1.02
USP4-206ENST00000461553 MRPL35Q9NZE8 188 aaKnown RBP8.68□□□□□ -1.02
USP4-206ENST00000461553 PYGO1Q9Y3Y4 419 aa8.68□□□□□ -1.02
USP4-206ENST00000461553 UBR4Q5T4S7 5183 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 A0A0J9YXV3 536 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 C9orf116Q5BN46 136 aaPredicted RBP8.67□□□□□ -1.02
USP4-206ENST00000461553 REG3GQ6UW15 175 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 SPINK6Q6UWN8 80 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 Q6ZN92 141 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 TEX43Q6ZNM6 134 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 IMMP2LQ96T52 175 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 C2orf88Q9BSF0 95 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 CYSLTR1Q9Y271 337 aa8.67□□□□□ -1.02
USP4-206ENST00000461553 PRSS47A8MTI9 375 aa8.66□□□□□ -1.02
USP4-206ENST00000461553 Q8N8P6 123 aa8.66□□□□□ -1.02
USP4-206ENST00000461553 A0A087WZ39 114 aa8.65□□□□□ -1.02
USP4-206ENST00000461553 A0A1W2PNN7 141 aa8.65□□□□□ -1.02
USP4-206ENST00000461553 ORMDL2Q53FV1 153 aa8.65□□□□□ -1.02
USP4-206ENST00000461553 C2orf66Q6UXQ4 117 aa8.65□□□□□ -1.02
USP4-206ENST00000461553 MT-ND6P03923 174 aa8.64□□□□□ -1.03
USP4-206ENST00000461553 CLLU1Q5K131 121 aa8.64□□□□□ -1.03
USP4-206ENST00000461553 LINC00242Q5T6M2 205 aa8.64□□□□□ -1.03
USP4-206ENST00000461553 LINC01600Q96MT4 127 aa8.64□□□□□ -1.03
USP4-206ENST00000461553 CTDSP1Q9GZU7 261 aa8.64□□□□□ -1.03
USP4-206ENST00000461553 K7EMI3 77 aa8.63□□□□□ -1.03
USP4-206ENST00000461553 TLX1NBP0CAT3 122 aa8.63□□□□□ -1.03
USP4-206ENST00000461553 UBE2D1P51668 147 aa8.63□□□□□ -1.03
USP4-206ENST00000461553 C10orf25Q5T742 122 aa8.63□□□□□ -1.03
USP4-206ENST00000461553 NXT2Q9NPJ8 142 aaKnown RBP8.63□□□□□ -1.03
USP4-206ENST00000461553 C6orf48Q9UBA6 75 aa8.63□□□□□ -1.03
USP4-206ENST00000461553 NPSP0C0P6 89 aa8.62□□□□□ -1.03
USP4-206ENST00000461553 UNQ6190/PRO20217Q6UXQ8 127 aa8.62□□□□□ -1.03
USP4-206ENST00000461553 PHF5AQ7RTV0 110 aaKnown RBP8.62□□□□□ -1.03
USP4-206ENST00000461553 PSORS1C2Q9UIG4 136 aa8.62□□□□□ -1.03
USP4-206ENST00000461553 TRBV30A0A0K0K1B3 111 aa8.61□□□□□ -1.03
USP4-206ENST00000461553 UQCC3Q6UW78 93 aa8.61□□□□□ -1.03
USP4-206ENST00000461553 VCX2Q9H322 139 aa8.61□□□□□ -1.03
USP4-206ENST00000461553 PRSS2P07478 247 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 ADCYAP1P18509 176 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 G0S2P27469 103 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 SRSF9Q13242 221 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP4-206ENST00000461553 GAGE2EQ4V326 116 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 C1orf137Q5JT78 98 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 PAPPA-AS1Q5QFB9 102 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 LINC00173Q6ZV60 143 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 FAM19A5Q7Z5A7 132 aaPredicted RBP8.6□□□□□ -1.03
USP4-206ENST00000461553 LINC01561Q8N1V8 128 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 PACRGQ96M98 296 aaPredicted RBP8.6□□□□□ -1.03
USP4-206ENST00000461553 AMELXQ99217 191 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 GAGE2DQ9UEU5 116 aa8.6□□□□□ -1.03
USP4-206ENST00000461553 TRAV9-1A0A075B6T8 112 aa8.59□□□□□ -1.03
USP4-206ENST00000461553 KIAA0087Q14695 138 aa8.59□□□□□ -1.03
USP4-206ENST00000461553 ZC2HC1BQ5TFG8 222 aa8.59□□□□□ -1.03
USP4-206ENST00000461553 FAM168BA1KXE4 195 aa8.58□□□□□ -1.04
USP4-206ENST00000461553 C2orf82Q6UX34 121 aa8.58□□□□□ -1.04
USP4-206ENST00000461553 TIMM17AQ99595 171 aa8.58□□□□□ -1.04
USP4-206ENST00000461553 TOMM7Q9P0U1 55 aa8.58□□□□□ -1.04
USP4-206ENST00000461553 LRP2P98164 4655 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 TMEM218A2RU14 115 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 IGIPA6NJ69 53 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 NDUFC2-KCTD14E9PQ53 114 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 M0QXV9 152 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 S100PP25815 95 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 HERVK_113P63121 156 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 SEC11AP67812 179 aa8.57□□□□□ -1.04
USP4-206ENST00000461553 CKS1BP61024 79 aa8.56□□□□□ -1.04
USP4-206ENST00000461553 KIAA1644Q3SXP7 199 aa8.56□□□□□ -1.04
USP4-206ENST00000461553 FAM19A3Q7Z5A8 133 aa8.56□□□□□ -1.04
USP4-206ENST00000461553 GEMIN7Q9H840 131 aaKnown RBP8.56□□□□□ -1.04
USP4-206ENST00000461553 UBE2BP63146 152 aa8.55□□□□□ -1.04
USP4-206ENST00000461553 Q8IZM0 81 aa8.55□□□□□ -1.04
USP4-206ENST00000461553 TOMM6Q96B49 74 aa8.55□□□□□ -1.04
USP4-206ENST00000461553 SEC11CQ9BY50 192 aa8.55□□□□□ -1.04
USP4-206ENST00000461553 IGLV7-43P04211 117 aa8.54□□□□□ -1.04
USP4-206ENST00000461553 C6orf226Q5I0X4 101 aa8.54□□□□□ -1.04
USP4-206ENST00000461553 ALKBH7Q9BT30 221 aaPredicted RBP8.54□□□□□ -1.04
USP4-206ENST00000461553 LINC01549A6NIU2 74 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms