RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 LOC107984640A0A0U1RRK4 108 aa7.55□□□□□ -1.2
USP40-210ENST00000454354 PTTG1IPP53801 180 aa7.55□□□□□ -1.2
USP40-210ENST00000454354 C5orf38Q86SI9 138 aa7.55□□□□□ -1.2
USP40-210ENST00000454354 OR10D4PQ8NGN7 298 aa7.55□□□□□ -1.2
USP40-210ENST00000454354 OPRPNQ99935 248 aaPredicted RBP7.55□□□□□ -1.2
USP40-210ENST00000454354 PYGO1Q9Y3Y4 419 aa7.55□□□□□ -1.2
USP40-210ENST00000454354 IGHV3OR16-9A0A0B4J2B5 98 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 IFITM10A6NMD0 228 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 RAB5AP20339 215 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 IFI27P40305 119 aaPredicted RBP7.54□□□□□ -1.2
USP40-210ENST00000454354 SPAG11BQ08648 103 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 COMMD7Q86VX2 200 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 CAMK2N2Q96S95 79 aa7.54□□□□□ -1.2
USP40-210ENST00000454354 TNXBP22105 4242 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 F8WDY8 70 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 ADCYAP1P18509 176 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 PRR3P79522 188 aaKnown RBP7.53□□□□□ -1.2
USP40-210ENST00000454354 RNF151Q2KHN1 245 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 IMMP2LQ96T52 175 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 MAP1LC3AQ9H492 121 aa7.53□□□□□ -1.2
USP40-210ENST00000454354 IGLV4-3A0A075B6K6 122 aa7.52□□□□□ -1.21
USP40-210ENST00000454354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.52□□□□□ -1.21
USP40-210ENST00000454354 SERTAD4-AS1Q5TG53 156 aa7.52□□□□□ -1.21
USP40-210ENST00000454354 Q8N8P6 123 aa7.52□□□□□ -1.21
USP40-210ENST00000454354 K7EMI3 77 aa7.51□□□□□ -1.21
USP40-210ENST00000454354 MT1HL1P0DM35 61 aa7.51□□□□□ -1.21
USP40-210ENST00000454354 ORAOV1Q8WV07 137 aa7.51□□□□□ -1.21
USP40-210ENST00000454354 TMEM141Q96I45 108 aa7.51□□□□□ -1.21
USP40-210ENST00000454354 MRPL35Q9NZE8 188 aaKnown RBP7.51□□□□□ -1.21
USP40-210ENST00000454354 A0A087WZ39 114 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 TGIF2-C20orf24A0A0A6YYL0 155 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 LOC389332A0A1B0GUA5 103 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 TMEM218A2RU14 115 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 NPSP0C0P6 89 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 GAGE2BQ13066 116 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 ORMDL2Q53FV1 153 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 LINC00242Q5T6M2 205 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 C2orf66Q6UXQ4 117 aa7.5□□□□□ -1.21
USP40-210ENST00000454354 TRAV9-1A0A075B6T8 112 aa7.49□□□□□ -1.21
USP40-210ENST00000454354 NDUFA1O15239 70 aa7.49□□□□□ -1.21
USP40-210ENST00000454354 TEX43Q6ZNM6 134 aa7.49□□□□□ -1.21
USP40-210ENST00000454354 CTDSP1Q9GZU7 261 aa7.49□□□□□ -1.21
USP40-210ENST00000454354 NXT2Q9NPJ8 142 aaKnown RBP7.49□□□□□ -1.21
USP40-210ENST00000454354 CYSLTR1Q9Y271 337 aa7.49□□□□□ -1.21
USP40-210ENST00000454354 UBE2D1P51668 147 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 RPL18AQ02543 176 aaKnown RBP7.48□□□□□ -1.21
USP40-210ENST00000454354 KIAA0087Q14695 138 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 NDUFA5Q16718 116 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 LINC00173Q6ZV60 143 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 AMELXQ99217 191 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 SEC11CQ9BY50 192 aa7.48□□□□□ -1.21
USP40-210ENST00000454354 A0A0J9YXV3 536 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 A0A1W2PNN7 141 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 TLX1NBP0CAT3 122 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 Q6ZRP5 223 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 FAM19A3Q7Z5A8 133 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 LINC01561Q8N1V8 128 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 C2orf88Q9BSF0 95 aa7.47□□□□□ -1.21
USP40-210ENST00000454354 C9orf116Q5BN46 136 aaPredicted RBP7.46□□□□□ -1.22
USP40-210ENST00000454354 C10orf25Q5T742 122 aa7.46□□□□□ -1.22
USP40-210ENST00000454354 SPINK6Q6UWN8 80 aa7.46□□□□□ -1.22
USP40-210ENST00000454354 Q6ZN92 141 aa7.46□□□□□ -1.22
USP40-210ENST00000454354 C6orf48Q9UBA6 75 aa7.46□□□□□ -1.22
USP40-210ENST00000454354 UNQ6190/PRO20217Q6UXQ8 127 aa7.45□□□□□ -1.22
USP40-210ENST00000454354 LINC01600Q96MT4 127 aa7.45□□□□□ -1.22
USP40-210ENST00000454354 TIMM17AQ99595 171 aa7.45□□□□□ -1.22
USP40-210ENST00000454354 TRBV30A0A0K0K1B3 111 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 G0S2P27469 103 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 SRSF9Q13242 221 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP40-210ENST00000454354 KIAA1644Q3SXP7 199 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 ZC2HC1BQ5TFG8 222 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 GNB1LQ9BYB4 327 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 VCX2Q9H322 139 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 PLA2G2DQ9UNK4 145 aa7.44□□□□□ -1.22
USP40-210ENST00000454354 PAPPA-AS1Q5QFB9 102 aa7.43□□□□□ -1.22
USP40-210ENST00000454354 C10orf91Q5T1B1 145 aa7.43□□□□□ -1.22
USP40-210ENST00000454354 TOMM6Q96B49 74 aa7.43□□□□□ -1.22
USP40-210ENST00000454354 LINC01546A6NGU7 62 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 S100PP25815 95 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 SEC11AP67812 179 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 COX19Q49B96 90 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 REG3GQ6UW15 175 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 PHF5AQ7RTV0 110 aaKnown RBP7.42□□□□□ -1.22
USP40-210ENST00000454354 PSORS1C2Q9UIG4 136 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 UBR4Q5T4S7 5183 aa7.42□□□□□ -1.22
USP40-210ENST00000454354 SNAPINO95295 136 aa7.41□□□□□ -1.22
USP40-210ENST00000454354 APOC3P02656 99 aa7.41□□□□□ -1.22
USP40-210ENST00000454354 C2orf82Q6UX34 121 aa7.41□□□□□ -1.22
USP40-210ENST00000454354 ERASQ7Z444 233 aa7.41□□□□□ -1.22
USP40-210ENST00000454354 SVBPQ8N300 66 aa7.41□□□□□ -1.22
USP40-210ENST00000454354 ALKBH7Q9BT30 221 aaPredicted RBP7.41□□□□□ -1.22
USP40-210ENST00000454354 CARHSP1Q9Y2V2 147 aaKnown RBP7.41□□□□□ -1.22
USP40-210ENST00000454354 FAM168BA1KXE4 195 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 LINC01549A6NIU2 74 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 NDUFC2-KCTD14E9PQ53 114 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 MT-ND6P03923 174 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 HERVK_113P63121 156 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 RHEBQ15382 184 aa7.4□□□□□ -1.22
USP40-210ENST00000454354 Q8IZM0 81 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms