RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TTC28Q96AY4 2481 aa2.53□□□□□ -2
VPS29-202ENST00000447578 ROS1P08922 2347 aa2.53□□□□□ -2
VPS29-202ENST00000447578 TRBV7-3A0A075B6L6 115 aa2.53□□□□□ -2
VPS29-202ENST00000447578 TRAV2A0A0B4J234 112 aa2.53□□□□□ -2
VPS29-202ENST00000447578 TRBV27A0A0K0K1C4 114 aa2.53□□□□□ -2
VPS29-202ENST00000447578 C11orf86A6NJI1 115 aa2.53□□□□□ -2
VPS29-202ENST00000447578 ZNF815PA8K554 130 aa2.53□□□□□ -2
VPS29-202ENST00000447578 H3BMM0 161 aa2.53□□□□□ -2
VPS29-202ENST00000447578 I3L3M4 83 aa2.53□□□□□ -2
VPS29-202ENST00000447578 PRM2P04554 102 aa2.53□□□□□ -2
VPS29-202ENST00000447578 CD28P10747 220 aa2.53□□□□□ -2
VPS29-202ENST00000447578 C12orf74Q32Q52 190 aa2.53□□□□□ -2
VPS29-202ENST00000447578 TMEM170BQ5T4T1 132 aa2.53□□□□□ -2
VPS29-202ENST00000447578 FAM222AQ5U5X8 452 aa2.53□□□□□ -2
VPS29-202ENST00000447578 SCGB1D4Q6XE38 83 aa2.53□□□□□ -2
VPS29-202ENST00000447578 TEX29Q8N6K0 151 aa2.53□□□□□ -2
VPS29-202ENST00000447578 OR5A1Q8NGJ0 315 aa2.53□□□□□ -2
VPS29-202ENST00000447578 PLEKHB2Q96CS7 222 aa2.53□□□□□ -2
VPS29-202ENST00000447578 SND1-IT1Q9HBX3 110 aa2.53□□□□□ -2
VPS29-202ENST00000447578 MUC6Q6W4X9 2439 aa2.53□□□□□ -2
VPS29-202ENST00000447578 GVINP1Q7Z2Y8 2422 aa2.53□□□□□ -2
VPS29-202ENST00000447578 ACACAQ13085 2346 aa2.53□□□□□ -2
VPS29-202ENST00000447578 ABCA4P78363 2273 aa2.53□□□□□ -2
VPS29-202ENST00000447578 SPENQ96T58 3664 aaKnown RBP2.52□□□□□ -2.01
VPS29-202ENST00000447578 A8MTW9 85 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 A8MWV9 139 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 IGLL5B9A064 214 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 M0R2P5 195 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 P0DMU3 169 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 FAM231AP0DMU4 169 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 FAM231CP0DMU5 169 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 LGALS3P17931 250 aaKnown RBP2.52□□□□□ -2.01
VPS29-202ENST00000447578 RBX1P62877 108 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 DEFB114Q30KQ6 69 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 OCIAD2Q56VL3 154 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 TMEM86BQ8N661 226 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 WFDC11Q8NEX6 87 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 VPS25Q9BRG1 176 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 MRPL16Q9NX20 251 aaKnown RBP2.52□□□□□ -2.01
VPS29-202ENST00000447578 CEP250Q9BV73 2442 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 PCNX1Q96RV3 2341 aa2.52□□□□□ -2.01
VPS29-202ENST00000447578 LOC400499M0QZD8 3231 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 AKAP13Q12802 2813 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 NACAE9PAV3 2078 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 PTPRZ1P23471 2315 aaPredicted RBP2.51□□□□□ -2.01
VPS29-202ENST00000447578 IGHV3-64A0A075B6Q5 118 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 IGKV2D-24A0A075B6R9 120 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 A0A0J9YY99 117 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 LEPROTO15243 131 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 TSPEAR-AS2P59090 65 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 RRN3P1Q2M238 152 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 ZNRF2Q8NHG8 242 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 LINC00467Q9BRT7 94 aa2.51□□□□□ -2.01
VPS29-202ENST00000447578 RIF1Q5UIP0 2472 aaKnown RBP2.5□□□□□ -2.01
VPS29-202ENST00000447578 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.5□□□□□ -2.01
VPS29-202ENST00000447578 IGKV2-29A2NJV5 120 aaPredicted RBP2.5□□□□□ -2.01
VPS29-202ENST00000447578 C8orf87E5RJ46 101 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 F5H768 121 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 J3QQQ9 107 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 K7ERU9 68 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 APOMO95445 188 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 ZNF22P17026 224 aaPredicted RBP2.5□□□□□ -2.01
VPS29-202ENST00000447578 CFAP126Q5VTH2 177 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 PTH2Q96A98 100 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 DNAJC30Q96LL9 226 aa2.5□□□□□ -2.01
VPS29-202ENST00000447578 SPANXB1Q9NS25 103 aaPredicted RBP2.5□□□□□ -2.01
VPS29-202ENST00000447578 TRGV1A0A0A0MS02 117 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 F8W1H4 67 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 H3BMG7 143 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 IGHV3-53P01767 116 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 IGHV3-30P01768 117 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 IGHV3-30-5P0DP03 117 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 UBE2D1P51668 147 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 MRPS36P82909 103 aaKnown RBP2.49□□□□□ -2.01
VPS29-202ENST00000447578 SMAGPQ0VAQ4 97 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 WFDC2Q14508 124 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 SFTA2Q6UW10 78 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 Q6ZUT4 128 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 NDUFA11Q86Y39 141 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 C1orf158Q8N1D5 194 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 AMELXQ99217 191 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 TIMM21Q9BVV7 248 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 SPANXA1Q9NS26 97 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 UBE2D4Q9Y2X8 147 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 ZFHX4Q86UP3 3567 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 BSNQ9UPA5 3926 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 FRYQ5TBA9 3013 aa2.49□□□□□ -2.01
VPS29-202ENST00000447578 ANKHD1Q8IWZ3 2542 aaKnown RBP2.48□□□□□ -2.01
VPS29-202ENST00000447578 COL6A6A6NMZ7 2263 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 IGHV1-58A0A0C4DH39 117 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 LOC107984156A0A0G2JMH3 177 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 TINCRA0A1B0GVN0 87 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 TMEM238C9JI98 176 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 J3QKU1 62 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 SPINK8P0C7L1 97 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 IGHV3-30-3P0DP02 117 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 CRYBA4P53673 196 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 C4orf26Q17RF5 130 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 LYRM7Q5U5X0 104 aa2.48□□□□□ -2.01
VPS29-202ENST00000447578 MUSTN1Q8IVN3 82 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms