RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 GAGE12HA6NDE8 117 aa11.46□□□□□ -0.57
LIME1-202ENST00000444951 H0Y8G0 127 aa11.46□□□□□ -0.57
LIME1-202ENST00000444951 PRSS1P07477 247 aa11.46□□□□□ -0.57
LIME1-202ENST00000444951 AMELXQ99217 191 aa11.46□□□□□ -0.57
LIME1-202ENST00000444951 CST9LQ9H4G1 147 aa11.45□□□□□ -0.58
LIME1-202ENST00000444951 HSPB8Q9UJY1 196 aa11.45□□□□□ -0.58
LIME1-202ENST00000444951 SNRPEP62304 92 aaKnown RBP11.44□□□□□ -0.58
LIME1-202ENST00000444951 PMVKQ15126 192 aa11.44□□□□□ -0.58
LIME1-202ENST00000444951 Q6ZRN7 208 aaPredicted RBP11.44□□□□□ -0.58
LIME1-202ENST00000444951 UBE2D1P51668 147 aa11.43□□□□□ -0.58
LIME1-202ENST00000444951 COX11Q9Y6N1 276 aa11.43□□□□□ -0.58
LIME1-202ENST00000444951 A0A0J9YXV3 536 aa11.42□□□□□ -0.58
LIME1-202ENST00000444951 LECT2O14960 151 aa11.42□□□□□ -0.58
LIME1-202ENST00000444951 S100A2P29034 98 aa11.42□□□□□ -0.58
LIME1-202ENST00000444951 MAPKAPK5-AS1Q8N8E1 139 aa11.42□□□□□ -0.58
LIME1-202ENST00000444951 C16orf90A8MZG2 172 aa11.41□□□□□ -0.58
LIME1-202ENST00000444951 KRTAP26-1Q6PEX3 210 aa11.41□□□□□ -0.58
LIME1-202ENST00000444951 HIST3H2BBQ8N257 126 aa11.41□□□□□ -0.58
LIME1-202ENST00000444951 COX6A2Q02221 97 aa11.4□□□□□ -0.58
LIME1-202ENST00000444951 FOXI1Q12951 378 aa11.4□□□□□ -0.58
LIME1-202ENST00000444951 LINC00242Q5T6M2 205 aa11.4□□□□□ -0.58
LIME1-202ENST00000444951 CD164L2Q6UWJ8 174 aa11.4□□□□□ -0.58
LIME1-202ENST00000444951 C5orf38Q86SI9 138 aa11.4□□□□□ -0.58
LIME1-202ENST00000444951 MAP1LC3CQ9BXW4 147 aa11.39□□□□□ -0.59
LIME1-202ENST00000444951 GEMIN7Q9H840 131 aaKnown RBP11.39□□□□□ -0.59
LIME1-202ENST00000444951 CHTOPQ9Y3Y2 248 aaKnown RBP11.39□□□□□ -0.59
LIME1-202ENST00000444951 C5orf52A6NGY3 159 aa11.37□□□□□ -0.59
LIME1-202ENST00000444951 COX7A2LO14548 114 aa11.37□□□□□ -0.59
LIME1-202ENST00000444951 KRTDAPP60985 99 aa11.37□□□□□ -0.59
LIME1-202ENST00000444951 WFDC2Q14508 124 aa11.37□□□□□ -0.59
LIME1-202ENST00000444951 TRAV12-1A0A0B4J245 112 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 MALP21145 153 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 SEC11AP67812 179 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 PACRGQ96M98 296 aaPredicted RBP11.36□□□□□ -0.59
LIME1-202ENST00000444951 HIST1H2BLQ99880 126 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 PMCHL2Q9BQD1 86 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 CHAC1Q9BUX1 264 aa11.36□□□□□ -0.59
LIME1-202ENST00000444951 TINCRA0A1B0GVN0 87 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 USP17L23D6RBM5 183 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 CDK2AP2O75956 126 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 HERVK_113P63121 156 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 SPATA12Q7Z6I5 190 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 LINC00469Q8N7U9 141 aa11.35□□□□□ -0.59
LIME1-202ENST00000444951 MRPL35Q9NZE8 188 aaKnown RBP11.35□□□□□ -0.59
LIME1-202ENST00000444951 IGLV4-69A0A075B6H9 119 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 A0A087WTM6 91 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 IGHV3OR16-9A0A0B4J2B5 98 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 SYS1-DBNDD2H3BUS1 97 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 C3orf79P0CE67 100 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 ODF1Q14990 250 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 FAM19A3Q7Z5A8 133 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 CDKN2A-AS1Q9UH64 79 aa11.34□□□□□ -0.59
LIME1-202ENST00000444951 LRCOL1A6NCL2 159 aa11.33□□□□□ -0.6
LIME1-202ENST00000444951 IGLC3P0DOY3 106 aa11.33□□□□□ -0.6
LIME1-202ENST00000444951 KRTAP10-2P60368 255 aa11.33□□□□□ -0.6
LIME1-202ENST00000444951 HIGD2BQ4VC39 106 aa11.33□□□□□ -0.6
LIME1-202ENST00000444951 C11orf86A6NJI1 115 aa11.32□□□□□ -0.6
LIME1-202ENST00000444951 F8VRH5 84 aa11.32□□□□□ -0.6
LIME1-202ENST00000444951 EREGO14944 169 aa11.32□□□□□ -0.6
LIME1-202ENST00000444951 TMEM170BQ5T4T1 132 aa11.31□□□□□ -0.6
LIME1-202ENST00000444951 CFAP161Q6P656 301 aa11.31□□□□□ -0.6
LIME1-202ENST00000444951 C15orf56Q8N910 161 aa11.31□□□□□ -0.6
LIME1-202ENST00000444951 FAT1Q14517 4588 aa11.31□□□□□ -0.6
LIME1-202ENST00000444951 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.3□□□□□ -0.6
LIME1-202ENST00000444951 A0A087WZ39 114 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 IGHV1-58A0A0C4DH39 117 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 hDV102S1A0JD36 115 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 SPINK8P0C7L1 97 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 PET117Q6UWS5 81 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 LINC00526Q96FQ7 95 aa11.3□□□□□ -0.6
LIME1-202ENST00000444951 APOMO95445 188 aa11.29□□□□□ -0.6
LIME1-202ENST00000444951 ZNF22P17026 224 aaPredicted RBP11.29□□□□□ -0.6
LIME1-202ENST00000444951 FUSP35637 526 aaKnown RBP eCLIP11.29□□□□□ -0.6
LIME1-202ENST00000444951 ORAOV1Q8WV07 137 aa11.29□□□□□ -0.6
LIME1-202ENST00000444951 VPS13BQ7Z7G8 4022 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 HERC1Q15751 4861 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 IGHV3-64A0A075B6Q5 118 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 H3BRM9 83 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 DPM2O94777 84 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 C14orf177Q52M58 125 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 Q8N814 137 aa11.28□□□□□ -0.6
LIME1-202ENST00000444951 IGLV5-45A0A087WSX0 123 aa11.27□□□□□ -0.61
LIME1-202ENST00000444951 PLNP26678 52 aa11.27□□□□□ -0.61
LIME1-202ENST00000444951 OR10D4PQ8NGN7 298 aa11.27□□□□□ -0.61
LIME1-202ENST00000444951 TOMM7Q9P0U1 55 aa11.27□□□□□ -0.61
LIME1-202ENST00000444951 C20orf202A1L168 122 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 ZNF561-AS1K7EIQ3 104 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 IGKCP01834 107 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 SPAG11BQ08648 103 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 LINC01545Q5VT33 79 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 Q8N1X5 172 aa11.26□□□□□ -0.61
LIME1-202ENST00000444951 SMIM1B2RUZ4 78 aa11.25□□□□□ -0.61
LIME1-202ENST00000444951 GVQW2A0A096LPI5 108 aaPredicted RBP11.24□□□□□ -0.61
LIME1-202ENST00000444951 LINC01561Q8N1V8 128 aa11.24□□□□□ -0.61
LIME1-202ENST00000444951 PRSS2P07478 247 aa11.23□□□□□ -0.61
LIME1-202ENST00000444951 ATOH7Q8N100 152 aa11.23□□□□□ -0.61
LIME1-202ENST00000444951 TMEM223A0PJW6 202 aa11.21□□□□□ -0.61
LIME1-202ENST00000444951 SCGB1D1O95968 90 aa11.21□□□□□ -0.61
LIME1-202ENST00000444951 C6orf226Q5I0X4 101 aa11.21□□□□□ -0.61
LIME1-202ENST00000444951 COX7B2Q8TF08 81 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms