RNA–Protein interactions for RNA: ENST00000442975.6

CDKN3-204, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best) BASIC

Gene CDKN3, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-204ENST00000442975 CAMK2N2Q96S95 79 aa13.34□□□□□ -0.27
CDKN3-204ENST00000442975 SEC11CQ9BY50 192 aa13.34□□□□□ -0.27
CDKN3-204ENST00000442975 Q6ZRU5 148 aa13.33□□□□□ -0.28
CDKN3-204ENST00000442975 IGLV4-3A0A075B6K6 122 aa13.32□□□□□ -0.28
CDKN3-204ENST00000442975 PRSS47A8MTI9 375 aa13.32□□□□□ -0.28
CDKN3-204ENST00000442975 S100PP25815 95 aa13.32□□□□□ -0.28
CDKN3-204ENST00000442975 C7orf33Q8WU49 177 aa13.32□□□□□ -0.28
CDKN3-204ENST00000442975 CYSLTR1Q9Y271 337 aa13.32□□□□□ -0.28
CDKN3-204ENST00000442975 LRP1Q07954 4544 aaKnown RBP13.32□□□□□ -0.28
CDKN3-204ENST00000442975 PKHD1L1Q86WI1 4243 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 HNRNPA3P51991 378 aaKnown RBP13.31□□□□□ -0.28
CDKN3-204ENST00000442975 KIAA1644Q3SXP7 199 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 ORMDL2Q53FV1 153 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 C2orf66Q6UXQ4 117 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 ORAOV1Q8WV07 137 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 TMEM141Q96I45 108 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 LINC00474Q9P2X8 69 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 PYGO1Q9Y3Y4 419 aa13.31□□□□□ -0.28
CDKN3-204ENST00000442975 FAT3Q8TDW7 4589 aa13.3□□□□□ -0.28
CDKN3-204ENST00000442975 TRAV9-1A0A075B6T8 112 aa13.3□□□□□ -0.28
CDKN3-204ENST00000442975 TGIF2-C20orf24A0A0A6YYL0 155 aa13.3□□□□□ -0.28
CDKN3-204ENST00000442975 IGHV3OR16-9A0A0B4J2B5 98 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 KRTAP29-1A8MX34 341 aaPredicted RBP13.29□□□□□ -0.28
CDKN3-204ENST00000442975 Q6ZN92 141 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 TEX43Q6ZNM6 134 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 OR10D4PQ8NGN7 298 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 C2orf48Q96LS8 159 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 C2orf88Q9BSF0 95 aa13.29□□□□□ -0.28
CDKN3-204ENST00000442975 NXT2Q9NPJ8 142 aaKnown RBP13.29□□□□□ -0.28
CDKN3-204ENST00000442975 GAGE2BQ13066 116 aa13.28□□□□□ -0.28
CDKN3-204ENST00000442975 LOC107984640A0A0U1RRK4 108 aa13.27□□□□□ -0.29
CDKN3-204ENST00000442975 PTTG1IPP53801 180 aa13.26□□□□□ -0.29
CDKN3-204ENST00000442975 RPL18AQ02543 176 aaKnown RBP13.26□□□□□ -0.29
CDKN3-204ENST00000442975 ZC2HC1BQ5TFG8 222 aa13.26□□□□□ -0.29
CDKN3-204ENST00000442975 K7EMI3 77 aa13.25□□□□□ -0.29
CDKN3-204ENST00000442975 LINC00242Q5T6M2 205 aa13.25□□□□□ -0.29
CDKN3-204ENST00000442975 A0A0J9YXV3 536 aa13.24□□□□□ -0.29
CDKN3-204ENST00000442975 RHEBQ15382 184 aa13.24□□□□□ -0.29
CDKN3-204ENST00000442975 RPS10P5Q9NQ39 176 aa13.24□□□□□ -0.29
CDKN3-204ENST00000442975 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.23□□□□□ -0.29
CDKN3-204ENST00000442975 UBE2D1P51668 147 aa13.23□□□□□ -0.29
CDKN3-204ENST00000442975 VCX2Q9H322 139 aa13.23□□□□□ -0.29
CDKN3-204ENST00000442975 CARHSP1Q9Y2V2 147 aaKnown RBP13.23□□□□□ -0.29
CDKN3-204ENST00000442975 A0A087WZ39 114 aa13.22□□□□□ -0.29
CDKN3-204ENST00000442975 C10orf91Q5T1B1 145 aa13.22□□□□□ -0.29
CDKN3-204ENST00000442975 GNB1LQ9BYB4 327 aa13.22□□□□□ -0.29
CDKN3-204ENST00000442975 NDUFA1O15239 70 aa13.21□□□□□ -0.29
CDKN3-204ENST00000442975 OXTP01178 125 aa13.21□□□□□ -0.29
CDKN3-204ENST00000442975 LINC00173Q6ZV60 143 aa13.21□□□□□ -0.29
CDKN3-204ENST00000442975 IGIPA6NJ69 53 aa13.2□□□□□ -0.3
CDKN3-204ENST00000442975 PRR3P79522 188 aaKnown RBP13.2□□□□□ -0.3
CDKN3-204ENST00000442975 MRPL35Q9NZE8 188 aaKnown RBP13.2□□□□□ -0.3
CDKN3-204ENST00000442975 G0S2P27469 103 aa13.19□□□□□ -0.3
CDKN3-204ENST00000442975 AMELXQ99217 191 aa13.19□□□□□ -0.3
CDKN3-204ENST00000442975 MRPL18Q9H0U6 180 aaKnown RBP13.19□□□□□ -0.3
CDKN3-204ENST00000442975 F8WDY8 70 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 MT-ND6P03923 174 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 NPSP0C0P6 89 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 FABP9Q0Z7S8 132 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 RNF151Q2KHN1 245 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 COX19Q49B96 90 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 PAPPA-AS1Q5QFB9 102 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 C10orf25Q5T742 122 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 TOMM6Q96B49 74 aa13.18□□□□□ -0.3
CDKN3-204ENST00000442975 ALKBH7Q9BT30 221 aaPredicted RBP13.18□□□□□ -0.3
CDKN3-204ENST00000442975 UNQ6190/PRO20217Q6UXQ8 127 aa13.17□□□□□ -0.3
CDKN3-204ENST00000442975 TIMM17AQ99595 171 aa13.17□□□□□ -0.3
CDKN3-204ENST00000442975 SCGB3A1Q96QR1 104 aa13.16□□□□□ -0.3
CDKN3-204ENST00000442975 C6orf48Q9UBA6 75 aa13.16□□□□□ -0.3
CDKN3-204ENST00000442975 A0A1W2PNN7 141 aa13.15□□□□□ -0.3
CDKN3-204ENST00000442975 APOC3P02656 99 aa13.15□□□□□ -0.3
CDKN3-204ENST00000442975 C9orf116Q5BN46 136 aaPredicted RBP13.15□□□□□ -0.3
CDKN3-204ENST00000442975 FA2HQ7L5A8 372 aa13.15□□□□□ -0.3
CDKN3-204ENST00000442975 NDUFA5Q16718 116 aa13.14□□□□□ -0.31
CDKN3-204ENST00000442975 C2orf82Q6UX34 121 aa13.14□□□□□ -0.31
CDKN3-204ENST00000442975 SMCO4Q9NRQ5 59 aa13.14□□□□□ -0.31
CDKN3-204ENST00000442975 PRSS2P07478 247 aa13.13□□□□□ -0.31
CDKN3-204ENST00000442975 KIAA0087Q14695 138 aa13.13□□□□□ -0.31
CDKN3-204ENST00000442975 ERASQ7Z444 233 aa13.13□□□□□ -0.31
CDKN3-204ENST00000442975 GEMIN7Q9H840 131 aaKnown RBP13.13□□□□□ -0.31
CDKN3-204ENST00000442975 TOMM7Q9P0U1 55 aa13.13□□□□□ -0.31
CDKN3-204ENST00000442975 HERVK_113P63121 156 aa13.12□□□□□ -0.31
CDKN3-204ENST00000442975 LINC01561Q8N1V8 128 aa13.12□□□□□ -0.31
CDKN3-204ENST00000442975 PACRGQ96M98 296 aaPredicted RBP13.12□□□□□ -0.31
CDKN3-204ENST00000442975 SEC11AP67812 179 aa13.11□□□□□ -0.31
CDKN3-204ENST00000442975 GAGE2EQ4V326 116 aa13.11□□□□□ -0.31
CDKN3-204ENST00000442975 Q6ZRP5 223 aa13.11□□□□□ -0.31
CDKN3-204ENST00000442975 GAGE2DQ9UEU5 116 aa13.11□□□□□ -0.31
CDKN3-204ENST00000442975 SVBPQ8N300 66 aa13.1□□□□□ -0.31
CDKN3-204ENST00000442975 CDKN2A-AS1Q9UH64 79 aa13.1□□□□□ -0.31
CDKN3-204ENST00000442975 LINC01546A6NGU7 62 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 SNAPINO95295 136 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 CKS1BP61024 79 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 FAM19A3Q7Z5A8 133 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 LINC00469Q8N7U9 141 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 TRAPPC1Q9Y5R8 145 aa13.09□□□□□ -0.31
CDKN3-204ENST00000442975 TRBV30A0A0K0K1B3 111 aa13.08□□□□□ -0.32
CDKN3-204ENST00000442975 TLX1NBP0CAT3 122 aa13.08□□□□□ -0.32
CDKN3-204ENST00000442975 PHF5AQ7RTV0 110 aaKnown RBP13.08□□□□□ -0.32
CDKN3-204ENST00000442975 FAM19A5Q7Z5A7 132 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms