RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ITPR3Q14573 2671 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 NUPR2A6NF83 97 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 LINC00322Q6ZN03 302 aaPredicted RBP8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 K7ERS5 55 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 SPTSSBQ8NFR3 76 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 Q8N976 141 aa8.94□□□□□ -0.98
CCDC88A-207ENST00000436346 FSTL3O95633 263 aa8.93□□□□□ -0.98
CCDC88A-207ENST00000436346 IGLV4-3A0A075B6K6 122 aa8.93□□□□□ -0.98
CCDC88A-207ENST00000436346 TRBV6-5A0A0K0K1A5 114 aa8.93□□□□□ -0.98
CCDC88A-207ENST00000436346 UBE2D2P62837 147 aa8.93□□□□□ -0.98
CCDC88A-207ENST00000436346 ENHOQ6UWT2 76 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 TMEM223A0PJW6 202 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 CCKP06307 115 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 A0A1B0GXF2 115 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 PRR15LQ9BU68 103 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 DHRS4-AS1Q9P1J3 65 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 LOC107984640A0A0U1RRK4 108 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 LINC01006Q8NI28 216 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 PCNTO95613 3336 aa8.92□□□□□ -0.98
CCDC88A-207ENST00000436346 C1orf229Q6ZS94 237 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 TRBV6-4A0A1B0GX49 114 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 CD164L2Q6UWJ8 174 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 C9orf85Q96MD7 179 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 LOC100131303A0A0U1RQF7 123 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 MPLKIPQ8TAP9 179 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 PTH2Q96A98 100 aa8.91□□□□□ -0.98
CCDC88A-207ENST00000436346 TAX1BP3O14907 124 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 BRK1Q8WUW1 75 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 SPATA12Q7Z6I5 190 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 PLAC8L1A1L4L8 177 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 PRM2P04554 102 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 LINC00308Q8TCZ7 52 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 LELP1Q5T871 98 aa8.9□□□□□ -0.98
CCDC88A-207ENST00000436346 LYPD6Q86Y78 171 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 IGLC6P0CF74 106 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 COX17Q14061 63 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 MAP1AP78559 2803 aaPredicted RBP8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 IGHV4-30-4P0DP06 118 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 MLST8Q9BVC4 326 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 ATP5EP2Q5VTU8 51 aa8.89□□□□□ -0.99
CCDC88A-207ENST00000436346 TRIAP1O43715 76 aa8.88□□□□□ -0.99
CCDC88A-207ENST00000436346 OXLD1Q5BKU9 147 aa8.88□□□□□ -0.99
CCDC88A-207ENST00000436346 C11orf1Q9H5F2 150 aa8.88□□□□□ -0.99
CCDC88A-207ENST00000436346 IGLV5-52A0A0A0MRZ9 124 aa8.88□□□□□ -0.99
CCDC88A-207ENST00000436346 C10orf25Q5T742 122 aa8.88□□□□□ -0.99
CCDC88A-207ENST00000436346 EIF4EBP1Q13541 118 aaPredicted RBP8.87□□□□□ -0.99
CCDC88A-207ENST00000436346 RBX1P62877 108 aa8.87□□□□□ -0.99
CCDC88A-207ENST00000436346 ZNF22P17026 224 aaPredicted RBP8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 G3V4G9 280 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 TSHBP01222 138 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 EBI3Q14213 229 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 CIRBP-AS1Q8TBR5 109 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 BRWD1-AS2P59051 145 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 IGLV2-8P01709 118 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 NDUFV3P56181 108 aaKnown RBP8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 Q6ZPA2 131 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 RETNQ9HD89 108 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 U3KQK5 164 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 IGLV4-69A0A075B6H9 119 aa8.86□□□□□ -0.99
CCDC88A-207ENST00000436346 LINC00643Q86TS7 51 aa8.85□□□□□ -0.99
CCDC88A-207ENST00000436346 Q6ZS46 218 aa8.85□□□□□ -0.99
CCDC88A-207ENST00000436346 M0R378 163 aa8.85□□□□□ -0.99
CCDC88A-207ENST00000436346 C6orf99Q4VX62 202 aa8.85□□□□□ -0.99
CCDC88A-207ENST00000436346 CRIP1P50238 77 aa8.84□□□□□ -0.99
CCDC88A-207ENST00000436346 IGLV2-11P01706 119 aa8.84□□□□□ -0.99
CCDC88A-207ENST00000436346 PRR9Q5T870 116 aa8.84□□□□□ -0.99
CCDC88A-207ENST00000436346 RNF185Q96GF1 192 aa8.84□□□□□ -0.99
CCDC88A-207ENST00000436346 CDSNQ15517 529 aa8.83□□□□□ -1
CCDC88A-207ENST00000436346 A8MZ25 164 aa8.83□□□□□ -1
CCDC88A-207ENST00000436346 WFDC13Q8IUB5 93 aa8.83□□□□□ -1
CCDC88A-207ENST00000436346 NRACQ8N912 160 aa8.83□□□□□ -1
CCDC88A-207ENST00000436346 TP73-AS1Q9UF72 201 aa8.83□□□□□ -1
CCDC88A-207ENST00000436346 ZNF73O43830 326 aaPredicted RBP8.83□□□□□ -1
CCDC88A-207ENST00000436346 TEX15Q9BXT5 2789 aa8.82□□□□□ -1
CCDC88A-207ENST00000436346 IGLV1-40P01703 118 aa8.82□□□□□ -1
CCDC88A-207ENST00000436346 RNASE3P12724 160 aaKnown RBP8.82□□□□□ -1
CCDC88A-207ENST00000436346 TRBV27A0A0K0K1C4 114 aa8.82□□□□□ -1
CCDC88A-207ENST00000436346 KLLNB2CW77 178 aa8.81□□□□□ -1
CCDC88A-207ENST00000436346 PRO3102Q9H379 93 aa8.81□□□□□ -1
CCDC88A-207ENST00000436346 M0QXV9 152 aa8.81□□□□□ -1
CCDC88A-207ENST00000436346 TRBV30A0A0K0K1B3 111 aa8.81□□□□□ -1
CCDC88A-207ENST00000436346 ZNF295-AS1Q8N0V1 137 aa8.8□□□□□ -1
CCDC88A-207ENST00000436346 REG3GQ6UW15 175 aa8.8□□□□□ -1
CCDC88A-207ENST00000436346 LINC00959A0A1B0GUT2 108 aa8.8□□□□□ -1
CCDC88A-207ENST00000436346 RPL28P46779 137 aaKnown RBP8.8□□□□□ -1
CCDC88A-207ENST00000436346 C20orf197Q8N268 126 aa8.8□□□□□ -1
CCDC88A-207ENST00000436346 NDUFA7O95182 113 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 Q8N6K4 173 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 SNURFQ9Y675 71 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 FAM236DA0A1B0GTK5 79 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 FAM236CP0DP71 79 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 BRI3O95415 125 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 Q6ZQY7 126 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 MT-ATP8P03928 68 aa8.79□□□□□ -1
CCDC88A-207ENST00000436346 CHD6Q8TD26 2715 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 MRPL55Q7Z7F7 128 aaKnown RBP8.78□□□□□ -1
CCDC88A-207ENST00000436346 MRPS36P82909 103 aaKnown RBP8.78□□□□□ -1
CCDC88A-207ENST00000436346 CRIP3Q6Q6R5 217 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 Q6ZVQ6 151 aa8.78□□□□□ -1
CCDC88A-207ENST00000436346 FAM19A3Q7Z5A8 133 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms