RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 FABP9Q0Z7S8 132 aa7.42□□□□□ -1.22
COL28A1-203ENST00000435823 C2orf66Q6UXQ4 117 aa7.42□□□□□ -1.22
COL28A1-203ENST00000435823 PRSS3P2Q8NHM4 247 aa7.42□□□□□ -1.22
COL28A1-203ENST00000435823 TGIF2-C20orf24A0A0A6YYL0 155 aa7.41□□□□□ -1.22
COL28A1-203ENST00000435823 IFITM10A6NMD0 228 aa7.41□□□□□ -1.22
COL28A1-203ENST00000435823 EPM2AB3EWF7 344 aa7.41□□□□□ -1.22
COL28A1-203ENST00000435823 COX7A2LO14548 114 aa7.41□□□□□ -1.22
COL28A1-203ENST00000435823 OPRPNQ99935 248 aaPredicted RBP7.41□□□□□ -1.22
COL28A1-203ENST00000435823 ALKBH7Q9BT30 221 aaPredicted RBP7.41□□□□□ -1.22
COL28A1-203ENST00000435823 IGHV3-64A0A075B6Q5 118 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 FAM229AH3BQW9 127 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 Q6ZN92 141 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 TEX43Q6ZNM6 134 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 TMEM141Q96I45 108 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 TRAPPC1Q9Y5R8 145 aa7.4□□□□□ -1.22
COL28A1-203ENST00000435823 PCLOQ9Y6V0 5065 aa7.4□□□□□ -1.23
COL28A1-203ENST00000435823 IGLV4-3A0A075B6K6 122 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 ZNF561-AS1K7EIQ3 104 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 APOMO95445 188 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 SMR3BP02814 79 aaPredicted RBP7.39□□□□□ -1.23
COL28A1-203ENST00000435823 SCXQ7RTU7 201 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 FAM104AQ969W3 186 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 C2orf88Q9BSF0 95 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 CHAC1Q9BUX1 264 aa7.39□□□□□ -1.23
COL28A1-203ENST00000435823 SLPIP03973 132 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 NPSP0C0P6 89 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 PAPPA-AS1Q5QFB9 102 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 Q5VSD8 79 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 SDIM1Q6ZPB5 146 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 FA2HQ7L5A8 372 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 C5orf38Q86SI9 138 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 VCX2Q9H322 139 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 SMCO4Q9NRQ5 59 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 DNAH8Q96JB1 4490 aa7.38□□□□□ -1.23
COL28A1-203ENST00000435823 LINC01549A6NIU2 74 aa7.37□□□□□ -1.23
COL28A1-203ENST00000435823 PKIGQ9Y2B9 76 aa7.37□□□□□ -1.23
COL28A1-203ENST00000435823 IGIPA6NJ69 53 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 SLC7A5P1Q8MH63 180 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 CIRBP-AS1Q8TBR5 109 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 TOMM6Q96B49 74 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 LINC00526Q96FQ7 95 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 CARD19Q96LW7 228 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 TIMM17AQ99595 171 aa7.36□□□□□ -1.23
COL28A1-203ENST00000435823 IGHV3OR16-9A0A0B4J2B5 98 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 LINC01546A6NGU7 62 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 SYCNQ0VAF6 134 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 OR10D4PQ8NGN7 298 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 SCGB3A1Q96QR1 104 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 AMELXQ99217 191 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.35□□□□□ -1.23
COL28A1-203ENST00000435823 ABCA13Q86UQ4 5058 aa7.35□□□□□ -1.23
COL28A1-203ENST00000435823 IGLV4-69A0A075B6H9 119 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 UBE2D1P51668 147 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 COX6A2Q02221 97 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 SPAG11BQ08648 103 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 LINC00242Q5T6M2 205 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 ERASQ7Z444 233 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 ORAOV1Q8WV07 137 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 DPH3Q96FX2 82 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 CAMK2N2Q96S95 79 aa7.34□□□□□ -1.23
COL28A1-203ENST00000435823 PLA2G1BP04054 148 aaKnown RBP7.33□□□□□ -1.24
COL28A1-203ENST00000435823 SEC11AP67812 179 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 ZC2HC1BQ5TFG8 222 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 LINC00173Q6ZV60 143 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 CBLN2Q8IUK8 224 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 C18orf32Q8TCD1 76 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 C2orf48Q96LS8 159 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 YPEL4Q96NS1 127 aa7.33□□□□□ -1.24
COL28A1-203ENST00000435823 A0A087WZ39 114 aa7.32□□□□□ -1.24
COL28A1-203ENST00000435823 CHTF8P0CG12 524 aa7.32□□□□□ -1.24
COL28A1-203ENST00000435823 RAB5BP61020 215 aa7.32□□□□□ -1.24
COL28A1-203ENST00000435823 CIRBPQ14011 172 aaKnown RBP7.32□□□□□ -1.24
COL28A1-203ENST00000435823 IGKV2-24A0A0C4DH68 120 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 F8WDY8 70 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 PANO1I0J062 215 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 LINC00614P0C842 121 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 Q6ZRU5 148 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 LINC01561Q8N1V8 128 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 SPACA4Q8TDM5 124 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 GEMIN7Q9H840 131 aaKnown RBP7.31□□□□□ -1.24
COL28A1-203ENST00000435823 LINC00474Q9P2X8 69 aa7.31□□□□□ -1.24
COL28A1-203ENST00000435823 NDUFA1O15239 70 aa7.3□□□□□ -1.24
COL28A1-203ENST00000435823 INAFM2P0DMQ5 153 aa7.3□□□□□ -1.24
COL28A1-203ENST00000435823 HERVK_113P63121 156 aa7.3□□□□□ -1.24
COL28A1-203ENST00000435823 MAJINQ3KP22 176 aa7.3□□□□□ -1.24
COL28A1-203ENST00000435823 FAM19A3Q7Z5A8 133 aa7.3□□□□□ -1.24
COL28A1-203ENST00000435823 A0A087WYN8 130 aa7.29□□□□□ -1.24
COL28A1-203ENST00000435823 A0A096LNI7 61 aa7.29□□□□□ -1.24
COL28A1-203ENST00000435823 LOC107984640A0A0U1RRK4 108 aa7.29□□□□□ -1.24
COL28A1-203ENST00000435823 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.29□□□□□ -1.24
COL28A1-203ENST00000435823 HBDP02042 147 aa7.29□□□□□ -1.24
COL28A1-203ENST00000435823 RNF151Q2KHN1 245 aa7.29□□□□□ -1.24
COL28A1-203ENST00000435823 FAT1Q14517 4588 aa7.28□□□□□ -1.24
COL28A1-203ENST00000435823 A0A0J9YXV3 536 aa7.28□□□□□ -1.24
COL28A1-203ENST00000435823 PRSS2P07478 247 aa7.28□□□□□ -1.24
COL28A1-203ENST00000435823 PMVKQ15126 192 aa7.28□□□□□ -1.24
COL28A1-203ENST00000435823 URB1-AS1Q96HZ7 61 aa7.28□□□□□ -1.24
COL28A1-203ENST00000435823 PACRGQ96M98 296 aaPredicted RBP7.28□□□□□ -1.24
COL28A1-203ENST00000435823 MRPL35Q9NZE8 188 aaKnown RBP7.28□□□□□ -1.24
COL28A1-203ENST00000435823 VPS13BQ7Z7G8 4022 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms