RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 HIGD1CA8MV81 97 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 MT-ND6P03923 174 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 RAB5AP20339 215 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 POLR2KP53803 58 aaKnown RBP4.93□□□□□ -1.62
VIM-202ENST00000421459 RPL18AQ02543 176 aaKnown RBP4.93□□□□□ -1.62
VIM-202ENST00000421459 C1orf137Q5JT78 98 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 C5orf38Q86SI9 138 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 MRAP2Q96G30 205 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 ST20Q9HBF5 79 aa4.93□□□□□ -1.62
VIM-202ENST00000421459 FAT4Q6V0I7 4981 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 TRAV13-1A0A0B4J241 112 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 A0A1B0GXF2 115 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 COX7A2LO14548 114 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 RAB4AP20338 218 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 MALP21145 153 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 ATP5L2Q7Z4Y8 100 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 MRPL52Q86TS9 123 aaKnown RBP4.92□□□□□ -1.62
VIM-202ENST00000421459 AMN1Q8IY45 258 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 CAMK2N2Q96S95 79 aa4.92□□□□□ -1.62
VIM-202ENST00000421459 A0A1B0GW15 77 aa4.91□□□□□ -1.62
VIM-202ENST00000421459 APOMO95445 188 aa4.91□□□□□ -1.62
VIM-202ENST00000421459 COX19Q49B96 90 aa4.91□□□□□ -1.62
VIM-202ENST00000421459 UBE2D4Q9Y2X8 147 aa4.91□□□□□ -1.62
VIM-202ENST00000421459 TRBV27A0A0K0K1C4 114 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 A0A1B0GUT8 65 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 C1orf196B1AJZ1 125 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 IGLV7-43P04211 117 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 HBBP68871 147 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 C10orf25Q5T742 122 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 Q6ZUT4 128 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 GNB1LQ9BYB4 327 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 PKIGQ9Y2B9 76 aa4.9□□□□□ -1.63
VIM-202ENST00000421459 A0A087WZ39 114 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 S100A8P05109 93 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 FCER1GP30273 86 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 SPAG11BQ08648 103 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 RIGQ13278 110 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 MRPL54Q6P161 138 aaKnown RBP4.89□□□□□ -1.63
VIM-202ENST00000421459 TMEM136Q6ZRR5 245 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 KRTAP7-1Q8IUC3 87 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 NRACQ8N912 160 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 FAM104AQ969W3 186 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 C2orf48Q96LS8 159 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 TMEM191AQ9H0A3 160 aa4.89□□□□□ -1.63
VIM-202ENST00000421459 VCYO14598 125 aa4.88□□□□□ -1.63
VIM-202ENST00000421459 RPL39P62891 51 aaKnown RBP4.88□□□□□ -1.63
VIM-202ENST00000421459 UNQ6190/PRO20217Q6UXQ8 127 aa4.88□□□□□ -1.63
VIM-202ENST00000421459 FAM19A5Q7Z5A7 132 aaPredicted RBP4.88□□□□□ -1.63
VIM-202ENST00000421459 BORCS7Q96B45 105 aa4.88□□□□□ -1.63
VIM-202ENST00000421459 H0Y9J4 135 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 TRGC2P03986 189 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 KRTAP1-4P0C5Y4 121 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 PRR4Q16378 134 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 GAGE2EQ4V326 116 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 ORAOV1Q8WV07 137 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 DIRC1Q969H9 104 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 GAGE2DQ9UEU5 116 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 MUC17Q685J3 4493 aa4.87□□□□□ -1.63
VIM-202ENST00000421459 SUMO2P61956 95 aaKnown RBP4.86□□□□□ -1.63
VIM-202ENST00000421459 FABP9Q0Z7S8 132 aa4.86□□□□□ -1.63
VIM-202ENST00000421459 RNF151Q2KHN1 245 aa4.86□□□□□ -1.63
VIM-202ENST00000421459 MRPL51Q4U2R6 128 aaKnown RBP4.86□□□□□ -1.63
VIM-202ENST00000421459 MRPL18Q9H0U6 180 aaKnown RBP4.86□□□□□ -1.63
VIM-202ENST00000421459 C6orf48Q9UBA6 75 aa4.86□□□□□ -1.63
VIM-202ENST00000421459 CSDC2Q9Y534 153 aaKnown RBP4.86□□□□□ -1.63
VIM-202ENST00000421459 TRAPPC1Q9Y5R8 145 aa4.86□□□□□ -1.63
VIM-202ENST00000421459 IGHV3OR16-9A0A0B4J2B5 98 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BKO60814 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BJP06899 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BOP23527 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BBP33778 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BDP58876 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 RAB5BP61020 215 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BCP62807 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST2H2BEQ16778 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.85□□□□□ -1.63
VIM-202ENST00000421459 FAM104BQ5XKR9 115 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 OR10D4PQ8NGN7 298 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BHQ93079 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 KIR2DL4Q99706 377 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BNQ99877 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 HIST1H2BMQ99879 126 aa4.85□□□□□ -1.63
VIM-202ENST00000421459 MRPL35Q9NZE8 188 aaKnown RBP4.85□□□□□ -1.63
VIM-202ENST00000421459 NDUFA1O15239 70 aa4.84□□□□□ -1.63
VIM-202ENST00000421459 COA6Q5JTJ3 125 aaKnown RBP4.84□□□□□ -1.63
VIM-202ENST00000421459 C2orf82Q6UX34 121 aa4.84□□□□□ -1.63
VIM-202ENST00000421459 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
VIM-202ENST00000421459 IGLV1-50A0A075B6I6 118 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 M0QXV9 152 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 TCAPO15273 167 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 TSPAN13O95857 204 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 PPBPP02775 128 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 UBE2BP63146 152 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 KIAA0087Q14695 138 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 C9orf129Q5T035 196 aaKnown RBP4.83□□□□□ -1.64
VIM-202ENST00000421459 ALKBH7Q9BT30 221 aaPredicted RBP4.83□□□□□ -1.64
VIM-202ENST00000421459 TIMM21Q9BVV7 248 aa4.83□□□□□ -1.64
VIM-202ENST00000421459 TMA7Q9Y2S6 64 aaKnown RBP4.83□□□□□ -1.64
VIM-202ENST00000421459 IFITM10A6NMD0 228 aa4.82□□□□□ -1.64
VIM-202ENST00000421459 TNFRSF6BO95407 300 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms