RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 MAP1LC3CQ9BXW4 147 aa8.21□□□□□ -1.1
LINC00339-201ENST00000404210 SACSQ9NZJ4 4579 aa8.2□□□□□ -1.1
LINC00339-201ENST00000404210 TINCRA0A1B0GVN0 87 aa8.19□□□□□ -1.1
LINC00339-201ENST00000404210 GAGE12HA6NDE8 117 aa8.19□□□□□ -1.1
LINC00339-201ENST00000404210 XCL1P47992 114 aa8.19□□□□□ -1.1
LINC00339-201ENST00000404210 SPATA12Q7Z6I5 190 aa8.19□□□□□ -1.1
LINC00339-201ENST00000404210 HIST1H2BLQ99880 126 aa8.19□□□□□ -1.1
LINC00339-201ENST00000404210 CHTOPQ9Y3Y2 248 aaKnown RBP8.19□□□□□ -1.1
LINC00339-201ENST00000404210 IGHV3OR16-9A0A0B4J2B5 98 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 A0A0J9YXV3 536 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 PSCAO43653 123 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 IGLC3P0DOY3 106 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 HERVK_113P63121 156 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 COX6A2Q02221 97 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 FOXI1Q12951 378 aa8.18□□□□□ -1.1
LINC00339-201ENST00000404210 HYDINQ4G0P3 5121 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 F8VRH5 84 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 SYS1-DBNDD2H3BUS1 97 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 RTL8CO15255 209 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 C3orf79P0CE67 100 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 TNP2Q05952 138 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 ODF1Q14990 250 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 PET117Q6UWS5 81 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 MAPKAPK5-AS1Q8N8E1 139 aa8.17□□□□□ -1.1
LINC00339-201ENST00000404210 GEMIN7Q9H840 131 aaKnown RBP8.17□□□□□ -1.1
LINC00339-201ENST00000404210 IGLV4-69A0A075B6H9 119 aa8.16□□□□□ -1.1
LINC00339-201ENST00000404210 LINC01561Q8N1V8 128 aa8.16□□□□□ -1.1
LINC00339-201ENST00000404210 IGLV5-45A0A087WSX0 123 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 A0A087WZ39 114 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 H0Y8G0 127 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 COX7A2LO14548 114 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 KRTDAPP60985 99 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 CFAP161Q6P656 301 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 C5orf38Q86SI9 138 aa8.15□□□□□ -1.1
LINC00339-201ENST00000404210 MRPL35Q9NZE8 188 aaKnown RBP8.15□□□□□ -1.1
LINC00339-201ENST00000404210 LRCOL1A6NCL2 159 aa8.14□□□□□ -1.11
LINC00339-201ENST00000404210 LINC00336Q6ZUF6 198 aa8.14□□□□□ -1.11
LINC00339-201ENST00000404210 CDKN2A-AS1Q9UH64 79 aa8.14□□□□□ -1.11
LINC00339-201ENST00000404210 IGHV1-58A0A0C4DH39 117 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 C11orf86A6NJI1 115 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 APOMO95445 188 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 MALP21145 153 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 LINC01545Q5VT33 79 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 CHAC1Q9BUX1 264 aa8.13□□□□□ -1.11
LINC00339-201ENST00000404210 H3BRM9 83 aa8.12□□□□□ -1.11
LINC00339-201ENST00000404210 DPM2O94777 84 aa8.12□□□□□ -1.11
LINC00339-201ENST00000404210 IGKCP01834 107 aa8.12□□□□□ -1.11
LINC00339-201ENST00000404210 ZNF22P17026 224 aaPredicted RBP8.12□□□□□ -1.11
LINC00339-201ENST00000404210 LINC00469Q8N7U9 141 aa8.12□□□□□ -1.11
LINC00339-201ENST00000404210 KMT2CQ8NEZ4 4911 aaKnown RBP8.12□□□□□ -1.11
LINC00339-201ENST00000404210 IGHV3-64A0A075B6Q5 118 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 A0A087WTM6 91 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 C20orf202A1L168 122 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 USP17L23D6RBM5 183 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 PLNP26678 52 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 AKR1D1P51857 326 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 C14orf177Q52M58 125 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 TMEM170BQ5T4T1 132 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 OR10D4PQ8NGN7 298 aa8.11□□□□□ -1.11
LINC00339-201ENST00000404210 C15orf56Q8N910 161 aa8.1□□□□□ -1.11
LINC00339-201ENST00000404210 PMCHL2Q9BQD1 86 aa8.1□□□□□ -1.11
LINC00339-201ENST00000404210 DNAH2Q9P225 4427 aa8.1□□□□□ -1.11
LINC00339-201ENST00000404210 WFDC2Q14508 124 aa8.09□□□□□ -1.11
LINC00339-201ENST00000404210 RYR2Q92736 4967 aa8.09□□□□□ -1.12
LINC00339-201ENST00000404210 GVQW2A0A096LPI5 108 aaPredicted RBP8.08□□□□□ -1.12
LINC00339-201ENST00000404210 LOC100996750A0A140TA64 210 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 TMEM223A0PJW6 202 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 SMIM1B2RUZ4 78 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 ZNF561-AS1K7EIQ3 104 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 LECT2O14960 151 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 GHRHP01286 108 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 Q8N814 137 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 ORAOV1Q8WV07 137 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 KRTAP4-6Q9BYQ5 205 aa8.08□□□□□ -1.12
LINC00339-201ENST00000404210 DNAH17Q9UFH2 4485 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 IGLV5-39A0A0G2JS06 123 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 F8WDY8 70 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 SPINK8P0C7L1 97 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 KIAA0087Q14695 138 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 DNAH10Q8IVF4 4471 aa8.07□□□□□ -1.12
LINC00339-201ENST00000404210 hDV102S1A0JD36 115 aa8.06□□□□□ -1.12
LINC00339-201ENST00000404210 HIGD2BQ4VC39 106 aa8.06□□□□□ -1.12
LINC00339-201ENST00000404210 Q8IZM0 81 aa8.06□□□□□ -1.12
LINC00339-201ENST00000404210 C2orf48Q96LS8 159 aa8.06□□□□□ -1.12
LINC00339-201ENST00000404210 SCGB1D1O95968 90 aa8.05□□□□□ -1.12
LINC00339-201ENST00000404210 PRSS2P07478 247 aa8.05□□□□□ -1.12
LINC00339-201ENST00000404210 HERVK_113P61574 105 aa8.05□□□□□ -1.12
LINC00339-201ENST00000404210 SPAG11BQ08648 103 aa8.05□□□□□ -1.12
LINC00339-201ENST00000404210 JOSD1Q15040 202 aaPredicted RBP8.05□□□□□ -1.12
LINC00339-201ENST00000404210 C6orf226Q5I0X4 101 aa8.05□□□□□ -1.12
LINC00339-201ENST00000404210 NTN5Q8WTR8 489 aaPredicted RBP8.05□□□□□ -1.12
LINC00339-201ENST00000404210 COX7B2Q8TF08 81 aa8.04□□□□□ -1.12
LINC00339-201ENST00000404210 TOMM7Q9P0U1 55 aa8.04□□□□□ -1.12
LINC00339-201ENST00000404210 FRAS1Q86XX4 4008 aa8.03□□□□□ -1.12
LINC00339-201ENST00000404210 LEPROTO15243 131 aa8.03□□□□□ -1.12
LINC00339-201ENST00000404210 SLPIP03973 132 aa8.03□□□□□ -1.12
LINC00339-201ENST00000404210 CNBPP62633 177 aaKnown RBP8.03□□□□□ -1.12
LINC00339-201ENST00000404210 LINC00526Q96FQ7 95 aa8.03□□□□□ -1.12
LINC00339-201ENST00000404210 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.02□□□□□ -1.13
LINC00339-201ENST00000404210 E9PLD3 99 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms