RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PRR3P79522 188 aaKnown RBP13.57□□□□□ -0.24
CCDC28B-201ENST00000373602 IGHV3OR16-9A0A0B4J2B5 98 aa13.56□□□□□ -0.24
CCDC28B-201ENST00000373602 MT1HL1P0DM35 61 aa13.56□□□□□ -0.24
CCDC28B-201ENST00000373602 SPAG11BQ08648 103 aa13.56□□□□□ -0.24
CCDC28B-201ENST00000373602 GAGE2BQ13066 116 aa13.56□□□□□ -0.24
CCDC28B-201ENST00000373602 LAMTOR2Q9Y2Q5 125 aa13.56□□□□□ -0.24
CCDC28B-201ENST00000373602 OR10D4PQ8NGN7 298 aa13.55□□□□□ -0.24
CCDC28B-201ENST00000373602 IFITM10A6NMD0 228 aa13.54□□□□□ -0.24
CCDC28B-201ENST00000373602 PYGO1Q9Y3Y4 419 aa13.54□□□□□ -0.24
CCDC28B-201ENST00000373602 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.53□□□□□ -0.24
CCDC28B-201ENST00000373602 IFI27P40305 119 aaPredicted RBP13.53□□□□□ -0.24
CCDC28B-201ENST00000373602 CLLU1Q5K131 121 aa13.53□□□□□ -0.24
CCDC28B-201ENST00000373602 RNF151Q2KHN1 245 aa13.52□□□□□ -0.25
CCDC28B-201ENST00000373602 ORAOV1Q8WV07 137 aa13.52□□□□□ -0.25
CCDC28B-201ENST00000373602 MAP1LC3AQ9H492 121 aa13.52□□□□□ -0.25
CCDC28B-201ENST00000373602 LOC389332A0A1B0GUA5 103 aa13.51□□□□□ -0.25
CCDC28B-201ENST00000373602 F8WDY8 70 aa13.51□□□□□ -0.25
CCDC28B-201ENST00000373602 IGLV4-3A0A075B6K6 122 aa13.5□□□□□ -0.25
CCDC28B-201ENST00000373602 Q8N8P6 123 aa13.5□□□□□ -0.25
CCDC28B-201ENST00000373602 A0A1W2PNN7 141 aa13.49□□□□□ -0.25
CCDC28B-201ENST00000373602 MRPL35Q9NZE8 188 aaKnown RBP13.49□□□□□ -0.25
CCDC28B-201ENST00000373602 A0A0J9YXV3 536 aa13.48□□□□□ -0.25
CCDC28B-201ENST00000373602 RPL18AQ02543 176 aaKnown RBP13.48□□□□□ -0.25
CCDC28B-201ENST00000373602 Q6ZRP5 223 aa13.48□□□□□ -0.25
CCDC28B-201ENST00000373602 TMEM141Q96I45 108 aa13.48□□□□□ -0.25
CCDC28B-201ENST00000373602 TGIF2-C20orf24A0A0A6YYL0 155 aa13.47□□□□□ -0.25
CCDC28B-201ENST00000373602 LINC00242Q5T6M2 205 aa13.47□□□□□ -0.25
CCDC28B-201ENST00000373602 PLA2G2DQ9UNK4 145 aa13.47□□□□□ -0.25
CCDC28B-201ENST00000373602 HMCN2Q8NDA2 5059 aa13.47□□□□□ -0.25
CCDC28B-201ENST00000373602 A0A087WZ39 114 aa13.46□□□□□ -0.25
CCDC28B-201ENST00000373602 NDUFA1O15239 70 aa13.46□□□□□ -0.25
CCDC28B-201ENST00000373602 C9orf116Q5BN46 136 aaPredicted RBP13.46□□□□□ -0.25
CCDC28B-201ENST00000373602 IMMP2LQ96T52 175 aa13.46□□□□□ -0.25
CCDC28B-201ENST00000373602 CYSLTR1Q9Y271 337 aa13.46□□□□□ -0.25
CCDC28B-201ENST00000373602 ORMDL2Q53FV1 153 aa13.45□□□□□ -0.26
CCDC28B-201ENST00000373602 SPINK6Q6UWN8 80 aa13.45□□□□□ -0.26
CCDC28B-201ENST00000373602 C2orf66Q6UXQ4 117 aa13.45□□□□□ -0.26
CCDC28B-201ENST00000373602 TEX43Q6ZNM6 134 aa13.45□□□□□ -0.26
CCDC28B-201ENST00000373602 K7EMI3 77 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 ADCYAP1P18509 176 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 C10orf25Q5T742 122 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 UQCC3Q6UW78 93 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 LINC01600Q96MT4 127 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 CTDSP1Q9GZU7 261 aa13.44□□□□□ -0.26
CCDC28B-201ENST00000373602 UBE2D1P51668 147 aa13.43□□□□□ -0.26
CCDC28B-201ENST00000373602 SRSF9Q13242 221 aaKnown RBP eCLIP13.43□□□□□ -0.26
CCDC28B-201ENST00000373602 KIAA0087Q14695 138 aa13.43□□□□□ -0.26
CCDC28B-201ENST00000373602 UNQ6190/PRO20217Q6UXQ8 127 aa13.43□□□□□ -0.26
CCDC28B-201ENST00000373602 NPSP0C0P6 89 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 TLX1NBP0CAT3 122 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 LINC00173Q6ZV60 143 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 AMELXQ99217 191 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 C2orf88Q9BSF0 95 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 NXT2Q9NPJ8 142 aaKnown RBP13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 C6orf48Q9UBA6 75 aa13.42□□□□□ -0.26
CCDC28B-201ENST00000373602 TMEM218A2RU14 115 aa13.41□□□□□ -0.26
CCDC28B-201ENST00000373602 IFITM2Q01629 132 aa13.41□□□□□ -0.26
CCDC28B-201ENST00000373602 Q6ZN92 141 aa13.41□□□□□ -0.26
CCDC28B-201ENST00000373602 IGIPA6NJ69 53 aa13.4□□□□□ -0.26
CCDC28B-201ENST00000373602 ZC2HC1BQ5TFG8 222 aa13.4□□□□□ -0.26
CCDC28B-201ENST00000373602 LINC01561Q8N1V8 128 aa13.4□□□□□ -0.26
CCDC28B-201ENST00000373602 VCX2Q9H322 139 aa13.4□□□□□ -0.26
CCDC28B-201ENST00000373602 TNXBP22105 4242 aa13.39□□□□□ -0.27
CCDC28B-201ENST00000373602 TRAV9-1A0A075B6T8 112 aa13.38□□□□□ -0.27
CCDC28B-201ENST00000373602 REG3GQ6UW15 175 aa13.38□□□□□ -0.27
CCDC28B-201ENST00000373602 PHF5AQ7RTV0 110 aaKnown RBP13.38□□□□□ -0.27
CCDC28B-201ENST00000373602 PSORS1C2Q9UIG4 136 aa13.37□□□□□ -0.27
CCDC28B-201ENST00000373602 TRBV30A0A0K0K1B3 111 aa13.36□□□□□ -0.27
CCDC28B-201ENST00000373602 KIAA1644Q3SXP7 199 aa13.36□□□□□ -0.27
CCDC28B-201ENST00000373602 FAM19A3Q7Z5A8 133 aa13.36□□□□□ -0.27
CCDC28B-201ENST00000373602 MT-ND6P03923 174 aa13.35□□□□□ -0.27
CCDC28B-201ENST00000373602 G0S2P27469 103 aa13.35□□□□□ -0.27
CCDC28B-201ENST00000373602 C2orf82Q6UX34 121 aa13.35□□□□□ -0.27
CCDC28B-201ENST00000373602 SEC11CQ9BY50 192 aa13.35□□□□□ -0.27
CCDC28B-201ENST00000373602 FAM168BA1KXE4 195 aa13.34□□□□□ -0.27
CCDC28B-201ENST00000373602 GAGE2EQ4V326 116 aa13.34□□□□□ -0.27
CCDC28B-201ENST00000373602 TIMM17AQ99595 171 aa13.34□□□□□ -0.27
CCDC28B-201ENST00000373602 GAGE2DQ9UEU5 116 aa13.34□□□□□ -0.27
CCDC28B-201ENST00000373602 PAPPA-AS1Q5QFB9 102 aa13.33□□□□□ -0.28
CCDC28B-201ENST00000373602 TOMM6Q96B49 74 aa13.33□□□□□ -0.28
CCDC28B-201ENST00000373602 KRTAP10-8P60410 259 aa13.32□□□□□ -0.28
CCDC28B-201ENST00000373602 PACRGQ96M98 296 aaPredicted RBP13.32□□□□□ -0.28
CCDC28B-201ENST00000373602 S100PP25815 95 aa13.31□□□□□ -0.28
CCDC28B-201ENST00000373602 C1orf137Q5JT78 98 aa13.31□□□□□ -0.28
CCDC28B-201ENST00000373602 GNB1LQ9BYB4 327 aa13.31□□□□□ -0.28
CCDC28B-201ENST00000373602 NDUFC2-KCTD14E9PQ53 114 aa13.3□□□□□ -0.28
CCDC28B-201ENST00000373602 HERVK_113P63121 156 aa13.3□□□□□ -0.28
CCDC28B-201ENST00000373602 SEC11AP67812 179 aa13.3□□□□□ -0.28
CCDC28B-201ENST00000373602 FAM19A5Q7Z5A7 132 aaPredicted RBP13.3□□□□□ -0.28
CCDC28B-201ENST00000373602 COMMD7Q86VX2 200 aa13.29□□□□□ -0.28
CCDC28B-201ENST00000373602 KRTAP7-1Q8IUC3 87 aa13.29□□□□□ -0.28
CCDC28B-201ENST00000373602 PRSS2P07478 247 aa13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 ERASQ7Z444 233 aa13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 Q8IZM0 81 aa13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 ALKBH7Q9BT30 221 aaPredicted RBP13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 TOMM7Q9P0U1 55 aa13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 CDKN2A-AS1Q9UH64 79 aa13.28□□□□□ -0.28
CCDC28B-201ENST00000373602 LINC01546A6NGU7 62 aa13.27□□□□□ -0.29
CCDC28B-201ENST00000373602 COX19Q49B96 90 aa13.27□□□□□ -0.29
CCDC28B-201ENST00000373602 C6orf226Q5I0X4 101 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms