RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM218AQ96MZ4 157 aa9.83□□□□□ -0.84
USP49-201ENST00000373006 IGLV5-45A0A087WSX0 123 aa9.83□□□□□ -0.84
USP49-201ENST00000373006 TRACP01848 142 aa9.83□□□□□ -0.84
USP49-201ENST00000373006 FN1P02751 2386 aaKnown RBP9.83□□□□□ -0.84
USP49-201ENST00000373006 C11orf72Q8NBR9 251 aa9.83□□□□□ -0.84
USP49-201ENST00000373006 SMIM1B2RUZ4 78 aa9.82□□□□□ -0.84
USP49-201ENST00000373006 IGLV5-39A0A0G2JS06 123 aa9.82□□□□□ -0.84
USP49-201ENST00000373006 TMEM89A2RUT3 159 aa9.82□□□□□ -0.84
USP49-201ENST00000373006 XCL2Q9UBD3 114 aa9.82□□□□□ -0.84
USP49-201ENST00000373006 LINC00526Q96FQ7 95 aa9.81□□□□□ -0.84
USP49-201ENST00000373006 PEMTQ9UBM1 199 aa9.81□□□□□ -0.84
USP49-201ENST00000373006 UBE2E2Q96LR5 201 aa9.81□□□□□ -0.84
USP49-201ENST00000373006 COX7CP15954 63 aa9.8□□□□□ -0.84
USP49-201ENST00000373006 LINC00643Q86TS7 51 aa9.8□□□□□ -0.84
USP49-201ENST00000373006 WFDC9Q8NEX5 89 aa9.8□□□□□ -0.84
USP49-201ENST00000373006 ACYP1P07311 99 aa9.8□□□□□ -0.84
USP49-201ENST00000373006 BBC3Q96PG8 261 aaPredicted RBP9.8□□□□□ -0.84
USP49-201ENST00000373006 C14orf132Q9NPU4 83 aa9.8□□□□□ -0.84
USP49-201ENST00000373006 TRGV1A0A0A0MS02 117 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 C22orf24Q9Y442 160 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 DNAL4O96015 105 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 RNASE1P07998 156 aaKnown RBP9.79□□□□□ -0.84
USP49-201ENST00000373006 BEAN1Q3B7T3 259 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 C11orf44Q8N8P7 122 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 NTM-AS1Q6ZSK4 140 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 MAP6D1Q9H9H5 199 aa9.79□□□□□ -0.84
USP49-201ENST00000373006 FASNP49327 2511 aaKnown RBP9.78□□□□□ -0.84
USP49-201ENST00000373006 IGKV3OR2-268A0A0C4DH90 116 aa9.78□□□□□ -0.84
USP49-201ENST00000373006 Q96MF0 132 aa9.77□□□□□ -0.84
USP49-201ENST00000373006 ZNF702PQ9H963 129 aa9.77□□□□□ -0.85
USP49-201ENST00000373006 INSP01308 110 aa9.76□□□□□ -0.85
USP49-201ENST00000373006 ATP5G1P05496 136 aa9.76□□□□□ -0.85
USP49-201ENST00000373006 IMUPQ9GZP8 106 aa9.76□□□□□ -0.85
USP49-201ENST00000373006 TOMM7Q9P0U1 55 aa9.76□□□□□ -0.85
USP49-201ENST00000373006 LRRC75A-AS1Q8N1F1 130 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 DYNLRB2Q8TF09 96 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 A8MTW9 85 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 PKIGQ9Y2B9 76 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 OXTP01178 125 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 C9orf129Q5T035 196 aaKnown RBP9.75□□□□□ -0.85
USP49-201ENST00000373006 HIST2H2BCQ6DN03 193 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 Q6ZTI0 123 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 COPS9Q8WXC6 57 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 CDC42SE2Q9NRR3 84 aa9.75□□□□□ -0.85
USP49-201ENST00000373006 RPL36AP83881 106 aaKnown RBP9.74□□□□□ -0.85
USP49-201ENST00000373006 LINC00337Q8N6G1 96 aa9.74□□□□□ -0.85
USP49-201ENST00000373006 LINC01356Q8N9X3 169 aa9.74□□□□□ -0.85
USP49-201ENST00000373006 RPL36ALQ969Q0 106 aaKnown RBP9.74□□□□□ -0.85
USP49-201ENST00000373006 C1orf43Q9BWL3 253 aa9.74□□□□□ -0.85
USP49-201ENST00000373006 SLPIP03973 132 aa9.73□□□□□ -0.85
USP49-201ENST00000373006 MALP21145 153 aa9.73□□□□□ -0.85
USP49-201ENST00000373006 MIR7-3HGQ8N6C7 128 aa9.73□□□□□ -0.85
USP49-201ENST00000373006 DPH3Q96FX2 82 aa9.73□□□□□ -0.85
USP49-201ENST00000373006 A0A087WYN8 130 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 HILS1P60008 231 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 C1orf158Q8N1D5 194 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 TRAV23DV6A0A075B6W5 121 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 ATOX1O00244 68 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 CRPP02741 224 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 HECTD1Q9ULT8 2610 aa9.72□□□□□ -0.85
USP49-201ENST00000373006 IGKV2-28A0A075B6P5 120 aa9.71□□□□□ -0.85
USP49-201ENST00000373006 A0A1W2PRX2 142 aa9.71□□□□□ -0.85
USP49-201ENST00000373006 IGKV2D-28P01615 120 aa9.71□□□□□ -0.85
USP49-201ENST00000373006 SND1-IT1Q9HBX3 110 aa9.71□□□□□ -0.85
USP49-201ENST00000373006 ZNF469Q96JG9 3925 aaPredicted RBP9.71□□□□□ -0.85
USP49-201ENST00000373006 AKAP9Q99996 3911 aa9.71□□□□□ -0.85
USP49-201ENST00000373006 K7EQD1 137 aa9.71□□□□□ -0.86
USP49-201ENST00000373006 UBE2L6O14933 153 aa9.71□□□□□ -0.86
USP49-201ENST00000373006 LINC00158P58513 81 aa9.71□□□□□ -0.86
USP49-201ENST00000373006 DEFB114Q30KQ6 69 aa9.71□□□□□ -0.86
USP49-201ENST00000373006 HELZ2Q9BYK8 2649 aaKnown RBP9.71□□□□□ -0.86
USP49-201ENST00000373006 NCR3O14931 201 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 INAFM2P0DMQ5 153 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 NBEAL2Q6ZNJ1 2754 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 FLNAP21333 2647 aaKnown RBP9.7□□□□□ -0.86
USP49-201ENST00000373006 TRAV13-2A0A0B4J235 113 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 LOC100131303A0A0U1RQF7 123 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 SMIM11BQ8TCY0 68 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 HIVEP2P31629 2446 aa9.7□□□□□ -0.86
USP49-201ENST00000373006 J3QLI3 93 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 RPL28P46779 137 aaKnown RBP9.69□□□□□ -0.86
USP49-201ENST00000373006 KRTAP10-9P60411 292 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 C5orf38Q86SI9 138 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 STHQ8IWL8 128 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 C2orf48Q96LS8 159 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 ODF3L2Q3SX64 289 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 Q6YL49 198 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 FAM19A3Q7Z5A8 133 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 NOP10Q9NPE3 64 aaKnown RBP9.69□□□□□ -0.86
USP49-201ENST00000373006 PFN2P35080 140 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 C20orf197Q8N268 126 aa9.69□□□□□ -0.86
USP49-201ENST00000373006 C11orf68Q9H3H3 251 aaKnown RBP9.69□□□□□ -0.86
USP49-201ENST00000373006 RPL18AQ02543 176 aaKnown RBP9.68□□□□□ -0.86
USP49-201ENST00000373006 FAM222AQ5U5X8 452 aa9.68□□□□□ -0.86
USP49-201ENST00000373006 WFDC11Q8NEX6 87 aa9.68□□□□□ -0.86
USP49-201ENST00000373006 COX7B2Q8TF08 81 aa9.68□□□□□ -0.86
USP49-201ENST00000373006 LINC00846Q9NV44 126 aa9.68□□□□□ -0.86
USP49-201ENST00000373006 USP17L23D6RBM5 183 aa9.68□□□□□ -0.86
USP49-201ENST00000373006 SETXQ7Z333 2677 aaKnown RBP9.68□□□□□ -0.86
USP49-201ENST00000373006 ITPR3Q14573 2671 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms