RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TMEM256-PLSCR3K7ERE1 68 aa10.75□□□□□ -0.69
COL17A1-201ENST00000353479 SPANXDQ9BXN6 97 aa10.75□□□□□ -0.69
COL17A1-201ENST00000353479 Q6ZTC4 211 aa10.75□□□□□ -0.69
COL17A1-201ENST00000353479 DOPEY1Q5JWR5 2465 aa10.74□□□□□ -0.69
COL17A1-201ENST00000353479 UBE2D1P51668 147 aa10.74□□□□□ -0.69
COL17A1-201ENST00000353479 RNASE8Q8TDE3 154 aaKnown RBP10.74□□□□□ -0.69
COL17A1-201ENST00000353479 LRCOL1A6NCL2 159 aa10.74□□□□□ -0.69
COL17A1-201ENST00000353479 CDC42SE2Q9NRR3 84 aa10.74□□□□□ -0.69
COL17A1-201ENST00000353479 TCL1BO95988 128 aa10.73□□□□□ -0.69
COL17A1-201ENST00000353479 ANKRD17O75179 2603 aaKnown RBP10.73□□□□□ -0.69
COL17A1-201ENST00000353479 NDUFB1O75438 58 aa10.72□□□□□ -0.69
COL17A1-201ENST00000353479 SPANXB1Q9NS25 103 aaPredicted RBP10.72□□□□□ -0.69
COL17A1-201ENST00000353479 IGKV3D-7A0A0C4DH55 119 aa10.72□□□□□ -0.69
COL17A1-201ENST00000353479 H3BT86 120 aa10.72□□□□□ -0.69
COL17A1-201ENST00000353479 FHL2Q14192 279 aa10.72□□□□□ -0.69
COL17A1-201ENST00000353479 A0A096LNI7 61 aa10.71□□□□□ -0.69
COL17A1-201ENST00000353479 PTH2Q96A98 100 aa10.71□□□□□ -0.69
COL17A1-201ENST00000353479 COX8CQ7Z4L0 72 aa10.7□□□□□ -0.7
COL17A1-201ENST00000353479 PCNTO95613 3336 aa10.7□□□□□ -0.7
COL17A1-201ENST00000353479 IGLV4-69A0A075B6H9 119 aa10.7□□□□□ -0.7
COL17A1-201ENST00000353479 CHD7Q9P2D1 2997 aa10.7□□□□□ -0.7
COL17A1-201ENST00000353479 NUPR2A6NF83 97 aa10.7□□□□□ -0.7
COL17A1-201ENST00000353479 IGIPA6NJ69 53 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 IGKV2-28A0A075B6P5 120 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 G3V4G9 280 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 IGKV2D-28P01615 120 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 C14orf132Q9NPU4 83 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 ACANP16112 2415 aa10.69□□□□□ -0.7
COL17A1-201ENST00000353479 SLPIP03973 132 aa10.68□□□□□ -0.7
COL17A1-201ENST00000353479 Q6ZSN1 163 aa10.67□□□□□ -0.7
COL17A1-201ENST00000353479 CHCHD7Q9BUK0 85 aa10.67□□□□□ -0.7
COL17A1-201ENST00000353479 FOXI1Q12951 378 aa10.67□□□□□ -0.7
COL17A1-201ENST00000353479 C6orf99Q4VX62 202 aa10.67□□□□□ -0.7
COL17A1-201ENST00000353479 LINC00242Q5T6M2 205 aa10.67□□□□□ -0.7
COL17A1-201ENST00000353479 LINC00694P0DN24 101 aa10.66□□□□□ -0.7
COL17A1-201ENST00000353479 URB1-AS1Q96HZ7 61 aa10.66□□□□□ -0.7
COL17A1-201ENST00000353479 TET2Q6N021 2002 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-201ENST00000353479 IGLV4-60A0A075B6I1 120 aa10.66□□□□□ -0.7
COL17A1-201ENST00000353479 BEAN1Q3B7T3 259 aa10.66□□□□□ -0.7
COL17A1-201ENST00000353479 TRAV23DV6A0A075B6W5 121 aa10.65□□□□□ -0.7
COL17A1-201ENST00000353479 TIMM17BO60830 172 aa10.65□□□□□ -0.7
COL17A1-201ENST00000353479 C7orf33Q8WU49 177 aa10.65□□□□□ -0.7
COL17A1-201ENST00000353479 CYSRT1A8MQ03 144 aa10.65□□□□□ -0.7
COL17A1-201ENST00000353479 TRIAP1O43715 76 aa10.65□□□□□ -0.7
COL17A1-201ENST00000353479 LOC107984640A0A0U1RRK4 108 aa10.65□□□□□ -0.71
COL17A1-201ENST00000353479 C5orf42Q9H799 3197 aa10.65□□□□□ -0.71
COL17A1-201ENST00000353479 COL27A1Q8IZC6 1860 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-201ENST00000353479 PRRC2CQ9Y520 2896 aaKnown RBP10.64□□□□□ -0.71
COL17A1-201ENST00000353479 LINC00310P59036 64 aa10.64□□□□□ -0.71
COL17A1-201ENST00000353479 Q8IZM0 81 aa10.64□□□□□ -0.71
COL17A1-201ENST00000353479 H0Y9J4 135 aa10.63□□□□□ -0.71
COL17A1-201ENST00000353479 POM121L12Q8N7R1 296 aa10.63□□□□□ -0.71
COL17A1-201ENST00000353479 HTTP42858 3142 aa10.63□□□□□ -0.71
COL17A1-201ENST00000353479 PDE6GP18545 87 aa10.62□□□□□ -0.71
COL17A1-201ENST00000353479 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
COL17A1-201ENST00000353479 M0R378 163 aa10.62□□□□□ -0.71
COL17A1-201ENST00000353479 KRTAP24-1Q3LI83 254 aa10.62□□□□□ -0.71
COL17A1-201ENST00000353479 COX6A2Q02221 97 aa10.61□□□□□ -0.71
COL17A1-201ENST00000353479 UNQ6190/PRO20217Q6UXQ8 127 aa10.61□□□□□ -0.71
COL17A1-201ENST00000353479 C2orf91Q6ZV80 131 aa10.61□□□□□ -0.71
COL17A1-201ENST00000353479 COX17Q14061 63 aa10.6□□□□□ -0.71
COL17A1-201ENST00000353479 TRBV30A0A0K0K1B3 111 aa10.59□□□□□ -0.71
COL17A1-201ENST00000353479 FHL3Q13643 280 aa10.59□□□□□ -0.71
COL17A1-201ENST00000353479 SMIM1B2RUZ4 78 aa10.59□□□□□ -0.71
COL17A1-201ENST00000353479 AGRNO00468 2067 aa10.59□□□□□ -0.71
COL17A1-201ENST00000353479 PPDPFQ9H3Y8 114 aa10.59□□□□□ -0.71
COL17A1-201ENST00000353479 A0A1B0GX51 115 aa10.58□□□□□ -0.72
COL17A1-201ENST00000353479 C9orf116Q5BN46 136 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-201ENST00000353479 TEX49A0A1B0GTD5 131 aa10.58□□□□□ -0.72
COL17A1-201ENST00000353479 LYPD5Q6UWN5 251 aa10.58□□□□□ -0.72
COL17A1-201ENST00000353479 WFDC10BQ8IUB3 73 aa10.58□□□□□ -0.72
COL17A1-201ENST00000353479 CELA1Q9UNI1 258 aa10.58□□□□□ -0.72
COL17A1-201ENST00000353479 FSHBP01225 129 aa10.57□□□□□ -0.72
COL17A1-201ENST00000353479 C11orf72Q8NBR9 251 aa10.57□□□□□ -0.72
COL17A1-201ENST00000353479 FAM236AA0A1B0GUQ0 79 aa10.56□□□□□ -0.72
COL17A1-201ENST00000353479 FAM236BA0A1B0GV22 79 aa10.56□□□□□ -0.72
COL17A1-201ENST00000353479 SMIM11BQ8TCY0 68 aa10.56□□□□□ -0.72
COL17A1-201ENST00000353479 Q6ZQY7 126 aa10.55□□□□□ -0.72
COL17A1-201ENST00000353479 RANBP2P49792 3224 aaKnown RBP10.55□□□□□ -0.72
COL17A1-201ENST00000353479 CSDC2Q9Y534 153 aaKnown RBP10.55□□□□□ -0.72
COL17A1-201ENST00000353479 USP17L23D6RBM5 183 aa10.55□□□□□ -0.72
COL17A1-201ENST00000353479 BPY2O14599 106 aa10.55□□□□□ -0.72
COL17A1-201ENST00000353479 MP68P56378 58 aa10.55□□□□□ -0.72
COL17A1-201ENST00000353479 LINC00474Q9P2X8 69 aa10.54□□□□□ -0.72
COL17A1-201ENST00000353479 AMELXQ99217 191 aa10.54□□□□□ -0.72
COL17A1-201ENST00000353479 CHD9Q3L8U1 2897 aa10.54□□□□□ -0.72
COL17A1-201ENST00000353479 ZNF73O43830 326 aaPredicted RBP10.53□□□□□ -0.72
COL17A1-201ENST00000353479 EGFEM1PQ0D2K5 195 aa10.53□□□□□ -0.72
COL17A1-201ENST00000353479 A0A096LNJ9 63 aa10.53□□□□□ -0.72
COL17A1-201ENST00000353479 DHRS4-AS1Q9P1J3 65 aa10.53□□□□□ -0.72
COL17A1-201ENST00000353479 PLAC8L1A1L4L8 177 aa10.53□□□□□ -0.72
COL17A1-201ENST00000353479 C6orf223Q8N319 242 aa10.53□□□□□ -0.72
COL17A1-201ENST00000353479 NHLRC4P0CG21 123 aaPredicted RBP10.52□□□□□ -0.72
COL17A1-201ENST00000353479 TSPEAR-AS2P59090 65 aa10.52□□□□□ -0.73
COL17A1-201ENST00000353479 KIF25-AS1Q9Y6Z4 181 aa10.52□□□□□ -0.73
COL17A1-201ENST00000353479 A0A1B0GUV1 79 aa10.51□□□□□ -0.73
COL17A1-201ENST00000353479 FAM19A4Q96LR4 140 aa10.51□□□□□ -0.73
COL17A1-201ENST00000353479 MUC7Q8TAX7 377 aa10.51□□□□□ -0.73
COL17A1-201ENST00000353479 ATOX1O00244 68 aa10.51□□□□□ -0.73
COL17A1-201ENST00000353479 M0QXV9 152 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms