RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 NPSP0C0P6 89 aa8.53□□□□□ -1.04
HLA-DQA1-201ENST00000343139 G0S2P27469 103 aa8.53□□□□□ -1.04
HLA-DQA1-201ENST00000343139 RPL39P62891 51 aaKnown RBP8.53□□□□□ -1.04
HLA-DQA1-201ENST00000343139 LINC00614P0C842 121 aa8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 CNBPP62633 177 aaKnown RBP8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 FOXI1Q12951 378 aa8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 CD164L2Q6UWJ8 174 aa8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 TEX43Q6ZNM6 134 aa8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 URB1-AS1Q96HZ7 61 aa8.52□□□□□ -1.04
HLA-DQA1-201ENST00000343139 IFI27P40305 119 aaPredicted RBP8.52□□□□□ -1.05
HLA-DQA1-201ENST00000343139 Q6ZSA8 131 aa8.52□□□□□ -1.05
HLA-DQA1-201ENST00000343139 Q6ZUT4 128 aa8.52□□□□□ -1.05
HLA-DQA1-201ENST00000343139 FAM104AQ969W3 186 aa8.52□□□□□ -1.05
HLA-DQA1-201ENST00000343139 CYSLTR1Q9Y271 337 aa8.52□□□□□ -1.05
HLA-DQA1-201ENST00000343139 DNAH8Q96JB1 4490 aa8.51□□□□□ -1.05
HLA-DQA1-201ENST00000343139 LINC01546A6NGU7 62 aa8.51□□□□□ -1.05
HLA-DQA1-201ENST00000343139 LINC01549A6NIU2 74 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 LINC00587B1AMM8 73 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 C3orf79P0CE67 100 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 XCL1P47992 114 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 XGP55808 180 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 KRTDAPP60985 99 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 C2orf66Q6UXQ4 117 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 C15orf56Q8N910 161 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 C9orf163Q8N9P6 203 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 AP5S1Q9NUS5 200 aa8.5□□□□□ -1.05
HLA-DQA1-201ENST00000343139 GVQW2A0A096LPI5 108 aaPredicted RBP8.49□□□□□ -1.05
HLA-DQA1-201ENST00000343139 hDV102S1A0JD36 115 aa8.49□□□□□ -1.05
HLA-DQA1-201ENST00000343139 PMCHL1Q16048 86 aa8.49□□□□□ -1.05
HLA-DQA1-201ENST00000343139 FA2HQ7L5A8 372 aa8.49□□□□□ -1.05
HLA-DQA1-201ENST00000343139 FAM19A2Q8N3H0 131 aa8.49□□□□□ -1.05
HLA-DQA1-201ENST00000343139 DDTP30046 118 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 PRSS3P2Q8NHM4 247 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 TMEM141Q96I45 108 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 HSPB8Q9UJY1 196 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 IGLV4-3A0A075B6K6 122 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 TRAV13-1A0A0B4J241 112 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 IGHV1-58A0A0C4DH39 117 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 LEPROTL1O95214 131 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 RNASE13Q5GAN3 156 aaKnown RBP8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 VAMP8Q9BV40 100 aa8.48□□□□□ -1.05
HLA-DQA1-201ENST00000343139 C20orf202A1L168 122 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 IGIPA6NJ69 53 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 PAPPA-AS1Q5QFB9 102 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 Q8N1X5 172 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 TOMM6Q96B49 74 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 TIMM17AQ99595 171 aa8.47□□□□□ -1.05
HLA-DQA1-201ENST00000343139 COX7A2LO14548 114 aa8.46□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC00469Q8N7U9 141 aa8.46□□□□□ -1.06
HLA-DQA1-201ENST00000343139 OPRPNQ99935 248 aaPredicted RBP8.46□□□□□ -1.06
HLA-DQA1-201ENST00000343139 FAM30AQ9NZY2 134 aa8.46□□□□□ -1.06
HLA-DQA1-201ENST00000343139 IGHV3OR16-9A0A0B4J2B5 98 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SLPIP03973 132 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 PET117Q6UWS5 81 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 Q6ZN92 141 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 AMELXQ99217 191 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 PRO1933Q9H354 126 aa8.45□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SDIM1Q6ZPB5 146 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 ERASQ7Z444 233 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 FAM19A3Q7Z5A8 133 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 MAP1LC3CQ9BXW4 147 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SYS1-DBNDD2H3BUS1 97 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 APOMO95445 188 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 HBDP02042 147 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 MALP21145 153 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC01620Q4KN68 170 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 C2orf88Q9BSF0 95 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 VCX2Q9H322 139 aa8.44□□□□□ -1.06
HLA-DQA1-201ENST00000343139 IGHV3-64A0A075B6Q5 118 aa8.43□□□□□ -1.06
HLA-DQA1-201ENST00000343139 HIGD2BQ4VC39 106 aa8.43□□□□□ -1.06
HLA-DQA1-201ENST00000343139 CHAC1Q9BUX1 264 aa8.43□□□□□ -1.06
HLA-DQA1-201ENST00000343139 ZNF561-AS1K7EIQ3 104 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 UBE2D1P51668 147 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC00242Q5T6M2 205 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC00173Q6ZV60 143 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC01561Q8N1V8 128 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 PKIGQ9Y2B9 76 aa8.42□□□□□ -1.06
HLA-DQA1-201ENST00000343139 F8WDY8 70 aa8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SEC11AP67812 179 aa8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 CIRBPQ14011 172 aaKnown RBP8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LBHQ53QV2 105 aaPredicted RBP8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 C2orf48Q96LS8 159 aa8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 KRTAP17-1Q9BYP8 105 aa8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 PAM16Q9Y3D7 125 aa8.41□□□□□ -1.06
HLA-DQA1-201ENST00000343139 A0A087WZ39 114 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 A0A096LNJ9 63 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 LINC01545Q5VT33 79 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 C5orf38Q86SI9 138 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 C14orf144Q96I85 54 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SCGB3A1Q96QR1 104 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 MIEN1Q9BRT3 115 aa8.4□□□□□ -1.06
HLA-DQA1-201ENST00000343139 SPATA45Q537H7 98 aa8.39□□□□□ -1.07
HLA-DQA1-201ENST00000343139 SCXQ7RTU7 201 aa8.39□□□□□ -1.07
HLA-DQA1-201ENST00000343139 PCLOQ9Y6V0 5065 aa8.39□□□□□ -1.07
HLA-DQA1-201ENST00000343139 FAT1Q14517 4588 aa8.38□□□□□ -1.07
HLA-DQA1-201ENST00000343139 IGLV4-69A0A075B6H9 119 aa8.38□□□□□ -1.07
HLA-DQA1-201ENST00000343139 HERVK_113P63121 156 aa8.38□□□□□ -1.07
HLA-DQA1-201ENST00000343139 SYCNQ0VAF6 134 aa8.38□□□□□ -1.07
HLA-DQA1-201ENST00000343139 CIRBP-AS1Q8TBR5 109 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms