RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TMEM136Q6ZRR5 245 aa12.17□□□□□ -0.46
LIME1-201ENST00000309546 ORAOV1Q8WV07 137 aa12.17□□□□□ -0.46
LIME1-201ENST00000309546 FAM104AQ969W3 186 aa12.17□□□□□ -0.46
LIME1-201ENST00000309546 A0A0J9YXV3 536 aa12.15□□□□□ -0.46
LIME1-201ENST00000309546 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.15□□□□□ -0.46
LIME1-201ENST00000309546 IFI27P40305 119 aaPredicted RBP12.15□□□□□ -0.46
LIME1-201ENST00000309546 MRPS36P82909 103 aaKnown RBP12.15□□□□□ -0.46
LIME1-201ENST00000309546 OR10D4PQ8NGN7 298 aa12.15□□□□□ -0.46
LIME1-201ENST00000309546 Q6ZRP5 223 aa12.14□□□□□ -0.47
LIME1-201ENST00000309546 IGHV3OR16-9A0A0B4J2B5 98 aa12.13□□□□□ -0.47
LIME1-201ENST00000309546 LOC389332A0A1B0GUA5 103 aa12.13□□□□□ -0.47
LIME1-201ENST00000309546 RAB14P61106 215 aa12.13□□□□□ -0.47
LIME1-201ENST00000309546 PNRC1Q12796 327 aaPredicted RBP12.13□□□□□ -0.47
LIME1-201ENST00000309546 A0A1W2PNN7 141 aa12.12□□□□□ -0.47
LIME1-201ENST00000309546 IFITM2Q01629 132 aa12.12□□□□□ -0.47
LIME1-201ENST00000309546 TNXBP22105 4242 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 TGIF2-C20orf24A0A0A6YYL0 155 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 MT-ND4LP03901 98 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 C9orf116Q5BN46 136 aaPredicted RBP12.11□□□□□ -0.47
LIME1-201ENST00000309546 SPINK6Q6UWN8 80 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 ANAPC16Q96DE5 110 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 MAP1LC3AQ9H492 121 aa12.11□□□□□ -0.47
LIME1-201ENST00000309546 NDUFA1O15239 70 aa12.1□□□□□ -0.47
LIME1-201ENST00000309546 IGLV4-3A0A075B6K6 122 aa12.09□□□□□ -0.47
LIME1-201ENST00000309546 RNF151Q2KHN1 245 aa12.09□□□□□ -0.47
LIME1-201ENST00000309546 TMEM141Q96I45 108 aa12.09□□□□□ -0.47
LIME1-201ENST00000309546 LINC01600Q96MT4 127 aa12.09□□□□□ -0.47
LIME1-201ENST00000309546 MRPL35Q9NZE8 188 aaKnown RBP12.09□□□□□ -0.47
LIME1-201ENST00000309546 LAMTOR2Q9Y2Q5 125 aa12.09□□□□□ -0.47
LIME1-201ENST00000309546 REG3GQ6UW15 175 aa12.08□□□□□ -0.48
LIME1-201ENST00000309546 PYGO1Q9Y3Y4 419 aa12.08□□□□□ -0.48
LIME1-201ENST00000309546 F8WDY8 70 aa12.07□□□□□ -0.48
LIME1-201ENST00000309546 CLLU1Q5K131 121 aa12.07□□□□□ -0.48
LIME1-201ENST00000309546 C10orf25Q5T742 122 aa12.07□□□□□ -0.48
LIME1-201ENST00000309546 TEX43Q6ZNM6 134 aa12.07□□□□□ -0.48
LIME1-201ENST00000309546 PHF5AQ7RTV0 110 aaKnown RBP12.07□□□□□ -0.48
LIME1-201ENST00000309546 IMMP2LQ96T52 175 aa12.07□□□□□ -0.48
LIME1-201ENST00000309546 PRSS47A8MTI9 375 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 MT-ND6P03923 174 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 LINC00242Q5T6M2 205 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 UNQ6190/PRO20217Q6UXQ8 127 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 CYSLTR1Q9Y271 337 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 UBR4Q5T4S7 5183 aa12.06□□□□□ -0.48
LIME1-201ENST00000309546 A0A087WZ39 114 aa12.05□□□□□ -0.48
LIME1-201ENST00000309546 C2orf66Q6UXQ4 117 aa12.05□□□□□ -0.48
LIME1-201ENST00000309546 Q8N8P6 123 aa12.05□□□□□ -0.48
LIME1-201ENST00000309546 C6orf48Q9UBA6 75 aa12.05□□□□□ -0.48
LIME1-201ENST00000309546 SRSF9Q13242 221 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIME1-201ENST00000309546 ZC2HC1BQ5TFG8 222 aa12.04□□□□□ -0.48
LIME1-201ENST00000309546 Q6ZN92 141 aa12.04□□□□□ -0.48
LIME1-201ENST00000309546 C2orf88Q9BSF0 95 aa12.04□□□□□ -0.48
LIME1-201ENST00000309546 PSORS1C2Q9UIG4 136 aa12.04□□□□□ -0.48
LIME1-201ENST00000309546 ODF1Q14990 250 aa12.03□□□□□ -0.48
LIME1-201ENST00000309546 GAGE2EQ4V326 116 aa12.03□□□□□ -0.48
LIME1-201ENST00000309546 CTDSP1Q9GZU7 261 aa12.03□□□□□ -0.48
LIME1-201ENST00000309546 GAGE2DQ9UEU5 116 aa12.03□□□□□ -0.48
LIME1-201ENST00000309546 FAM168BA1KXE4 195 aa12.02□□□□□ -0.49
LIME1-201ENST00000309546 UBE2D1P51668 147 aa12.02□□□□□ -0.49
LIME1-201ENST00000309546 ORMDL2Q53FV1 153 aa12.02□□□□□ -0.49
LIME1-201ENST00000309546 C1orf137Q5JT78 98 aa12.02□□□□□ -0.49
LIME1-201ENST00000309546 FAM19A5Q7Z5A7 132 aaPredicted RBP12.01□□□□□ -0.49
LIME1-201ENST00000309546 TLX1NBP0CAT3 122 aa12□□□□□ -0.49
LIME1-201ENST00000309546 KIAA0087Q14695 138 aa12□□□□□ -0.49
LIME1-201ENST00000309546 C2orf82Q6UX34 121 aa12□□□□□ -0.49
LIME1-201ENST00000309546 VCX2Q9H322 139 aa12□□□□□ -0.49
LIME1-201ENST00000309546 LINC00173Q6ZV60 143 aa11.99□□□□□ -0.49
LIME1-201ENST00000309546 NXT2Q9NPJ8 142 aaKnown RBP11.99□□□□□ -0.49
LIME1-201ENST00000309546 PACRGQ96M98 296 aaPredicted RBP11.98□□□□□ -0.49
LIME1-201ENST00000309546 AMELXQ99217 191 aa11.98□□□□□ -0.49
LIME1-201ENST00000309546 TRBV30A0A0K0K1B3 111 aa11.97□□□□□ -0.49
LIME1-201ENST00000309546 K7EMI3 77 aa11.97□□□□□ -0.49
LIME1-201ENST00000309546 ADCYAP1P18509 176 aa11.97□□□□□ -0.49
LIME1-201ENST00000309546 KIAA1644Q3SXP7 199 aa11.97□□□□□ -0.49
LIME1-201ENST00000309546 TOMM7Q9P0U1 55 aa11.97□□□□□ -0.49
LIME1-201ENST00000309546 PRSS2P07478 247 aa11.96□□□□□ -0.49
LIME1-201ENST00000309546 KRTAP10-8P60410 259 aa11.96□□□□□ -0.49
LIME1-201ENST00000309546 LINC01561Q8N1V8 128 aa11.96□□□□□ -0.49
LIME1-201ENST00000309546 IGIPA6NJ69 53 aa11.95□□□□□ -0.5
LIME1-201ENST00000309546 NDUFC2-KCTD14E9PQ53 114 aa11.94□□□□□ -0.5
LIME1-201ENST00000309546 M0QXV9 152 aa11.94□□□□□ -0.5
LIME1-201ENST00000309546 NPSP0C0P6 89 aa11.94□□□□□ -0.5
LIME1-201ENST00000309546 KRTAP11-1Q8IUC1 163 aa11.94□□□□□ -0.5
LIME1-201ENST00000309546 IGLV7-43P04211 117 aa11.93□□□□□ -0.5
LIME1-201ENST00000309546 CKS1BP61024 79 aa11.93□□□□□ -0.5
LIME1-201ENST00000309546 UBE2BP63146 152 aa11.93□□□□□ -0.5
LIME1-201ENST00000309546 UQCC3Q6UW78 93 aa11.93□□□□□ -0.5
LIME1-201ENST00000309546 TMEM218A2RU14 115 aa11.92□□□□□ -0.5
LIME1-201ENST00000309546 G0S2P27469 103 aa11.92□□□□□ -0.5
LIME1-201ENST00000309546 PAPPA-AS1Q5QFB9 102 aa11.92□□□□□ -0.5
LIME1-201ENST00000309546 HERVK_113P63121 156 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 C6orf226Q5I0X4 101 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 C9orf129Q5T035 196 aaKnown RBP11.91□□□□□ -0.5
LIME1-201ENST00000309546 FAM19A3Q7Z5A8 133 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 KRTAP7-1Q8IUC3 87 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 TOMM6Q96B49 74 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 TIMM17AQ99595 171 aa11.91□□□□□ -0.5
LIME1-201ENST00000309546 ALKBH7Q9BT30 221 aaPredicted RBP11.91□□□□□ -0.5
LIME1-201ENST00000309546 GEMIN7Q9H840 131 aaKnown RBP11.91□□□□□ -0.5
LIME1-201ENST00000309546 TRAV9-1A0A075B6T8 112 aa11.9□□□□□ -0.5
LIME1-201ENST00000309546 SEC11AP67812 179 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms