RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 PKHD1L1Q86WI1 4243 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-222ENST00000642141 C9JQL5 133 aa6.56□□□□□ -1.36
SCN1A-222ENST00000642141 NDUFS6O75380 124 aaKnown RBP6.56□□□□□ -1.36
SCN1A-222ENST00000642141 RAB4AP20338 218 aa6.56□□□□□ -1.36
SCN1A-222ENST00000642141 COX6A2Q02221 97 aa6.56□□□□□ -1.36
SCN1A-222ENST00000642141 PEA15Q15121 130 aa6.56□□□□□ -1.36
SCN1A-222ENST00000642141 CT83Q5H943 113 aa6.56□□□□□ -1.36
SCN1A-222ENST00000642141 A0A087WYN8 130 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 IGKV2-24A0A0C4DH68 120 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 TRBV6-5A0A0K0K1A5 114 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 F8W036 122 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 SRSF3P84103 164 aaKnown RBP6.55□□□□□ -1.36
SCN1A-222ENST00000642141 FOXI1Q12951 378 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 TMEM241Q24JQ0 296 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 CFAP161Q6P656 301 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 NUP35Q8NFH5 326 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 OR5A1Q8NGJ0 315 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 TMEM101Q96IK0 257 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 BTF3L4Q96K17 158 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 TMEM191AQ9H0A3 160 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 OSTCQ9NRP0 149 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 V9GYV3 84 aa6.55□□□□□ -1.36
SCN1A-222ENST00000642141 LINC00959A0A1B0GUT2 108 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 H7C423 109 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 CCL25O15444 150 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 ESDP10768 282 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 RIGQ13278 110 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 ADIRFQ15847 76 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 PRSS3P2Q8NHM4 247 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 MRAP2Q96G30 205 aa6.54□□□□□ -1.36
SCN1A-222ENST00000642141 FAT3Q8TDW7 4589 aa6.53□□□□□ -1.36
SCN1A-222ENST00000642141 POLR2KP53803 58 aaKnown RBP6.53□□□□□ -1.36
SCN1A-222ENST00000642141 RPL23P62829 140 aaKnown RBP6.53□□□□□ -1.36
SCN1A-222ENST00000642141 MAJINQ3KP22 176 aa6.53□□□□□ -1.36
SCN1A-222ENST00000642141 RNASE13Q5GAN3 156 aaKnown RBP6.53□□□□□ -1.36
SCN1A-222ENST00000642141 SPACA4Q8TDM5 124 aa6.53□□□□□ -1.36
SCN1A-222ENST00000642141 ISOC2Q96AB3 205 aa6.53□□□□□ -1.36
SCN1A-222ENST00000642141 SMCO4Q9NRQ5 59 aa6.53□□□□□ -1.36
SCN1A-222ENST00000642141 SCO1O75880 301 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 OXTP01178 125 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 ZNF25P17030 456 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-222ENST00000642141 FCER1GP30273 86 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 CAMPP49913 170 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 CIRBPQ14011 172 aaKnown RBP6.52□□□□□ -1.37
SCN1A-222ENST00000642141 ZNF664Q8N3J9 261 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 CDC42SE2Q9NRR3 84 aa6.52□□□□□ -1.37
SCN1A-222ENST00000642141 GVQW2A0A096LPI5 108 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-222ENST00000642141 TRBV27A0A0K0K1C4 114 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 C7orf77A4D0Y5 90 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 VCYO14598 125 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 PHOX2AO14813 284 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 RHEBQ15382 184 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 SS18Q15532 418 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 MRPL51Q4U2R6 128 aaKnown RBP6.51□□□□□ -1.37
SCN1A-222ENST00000642141 NRACQ8N912 160 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 NAT8BQ9UHF3 227 aa6.51□□□□□ -1.37
SCN1A-222ENST00000642141 A0A096LNI7 61 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 MT-ND4LP03901 98 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 SUMO2P61956 95 aaKnown RBP6.5□□□□□ -1.37
SCN1A-222ENST00000642141 S100A12P80511 92 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 FAM74A3Q4VXF1 159 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 FAM104BQ5XKR9 115 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 MRPL54Q6P161 138 aaKnown RBP6.5□□□□□ -1.37
SCN1A-222ENST00000642141 STPG4Q8N801 248 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 NAT8Q9UHE5 227 aa6.5□□□□□ -1.37
SCN1A-222ENST00000642141 TRAV13-1A0A0B4J241 112 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 IGHV1-58A0A0C4DH39 117 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 SMIM27A0A1W2PRY6 76 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 RAB5BP61020 215 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 CD164L2Q6UWJ8 174 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 MRPL52Q86TS9 123 aaKnown RBP6.49□□□□□ -1.37
SCN1A-222ENST00000642141 PLAC8Q9NZF1 115 aa6.49□□□□□ -1.37
SCN1A-222ENST00000642141 ZNF561-AS1K7EIQ3 104 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 S100A8P05109 93 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 MALP21145 153 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 CKS2P33552 79 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 CARD19Q96LW7 228 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 KIR2DL4Q99706 377 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 UBE2D4Q9Y2X8 147 aa6.48□□□□□ -1.37
SCN1A-222ENST00000642141 RPL39P62891 51 aaKnown RBP6.47□□□□□ -1.37
SCN1A-222ENST00000642141 SYCNQ0VAF6 134 aa6.47□□□□□ -1.37
SCN1A-222ENST00000642141 SERTAD4-AS1Q5TG53 156 aa6.47□□□□□ -1.37
SCN1A-222ENST00000642141 Q6ZUT4 128 aa6.47□□□□□ -1.37
SCN1A-222ENST00000642141 C5orf38Q86SI9 138 aa6.47□□□□□ -1.37
SCN1A-222ENST00000642141 C7orf33Q8WU49 177 aa6.47□□□□□ -1.37
SCN1A-222ENST00000642141 OPRPNQ99935 248 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-222ENST00000642141 IGLV4-69A0A075B6H9 119 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 C1orf196B1AJZ1 125 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 D6R8Y8 96 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 COX7A2LO14548 114 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 TCAPO15273 167 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 TNFRSF6BO95407 300 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 PPP1R17O96001 155 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 ADCYAP1P18509 176 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 PNRC1Q12796 327 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-222ENST00000642141 GAGE2BQ13066 116 aa6.46□□□□□ -1.38
SCN1A-222ENST00000642141 HMCN2Q8NDA2 5059 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 COLCA2A8K830 154 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 PPP1R2P9O14990 202 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms