RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 Q8N9L7 120 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 K7EP13 123 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 UQCRQO14949 82 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 AVPP01185 164 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 IGKV1-17P01599 117 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 C2orf66Q6UXQ4 117 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 LHFPL1Q86WI0 220 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 IMUPQ9GZP8 106 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 FAM236DA0A1B0GTK5 79 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 I3L2K1 104 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 PLA2G10O15496 165 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 FAM236CP0DP71 79 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 CTRLP40313 264 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 MSMPQ1L6U9 139 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 ZNF664Q8N3J9 261 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 YPEL4Q96NS1 127 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 TRAV23DV6A0A075B6W5 121 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 A0A0G2JRQ6 117 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 J3QRE1 110 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 IGLV1-51P01701 117 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 REG3AQ06141 175 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 CSDC2Q9Y534 153 aaKnown RBP3.77□□□□□ -1.81
SCN1A-218ENST00000640036 LELP1Q5T871 98 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 MORN5Q5VZ52 161 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 OCC1Q8TAD7 63 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 MDFIQ99750 246 aa3.77□□□□□ -1.81
SCN1A-218ENST00000640036 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-218ENST00000640036 IGKV2-29A2NJV5 120 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-218ENST00000640036 POM121L12Q8N7R1 296 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 EBI3Q14213 229 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 LINC00643Q86TS7 51 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 C6orf223Q8N319 242 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 LINC00269Q8N2A0 174 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 ODF3Q96PU9 254 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 A0A087X0K7 114 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 SYCNQ0VAF6 134 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 Q6ZTI0 123 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 FAM231DQ6ZW35 169 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 RITA1Q96K30 269 aa3.76□□□□□ -1.81
SCN1A-218ENST00000640036 CFC1BP0CG36 223 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 CFC1P0CG37 223 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 RPL28P46779 137 aaKnown RBP3.75□□□□□ -1.81
SCN1A-218ENST00000640036 CDPF1Q6NVV7 123 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 C10orf99Q6UWK7 81 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 Q6ZUT4 128 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 COX7B2Q8TF08 81 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 ZNF581Q9P0T4 197 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 IGLV2-11P01706 119 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 HIST2H2BDQ6DRA6 164 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 SND1-IT1Q9HBX3 110 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 FAM19A1Q7Z5A9 133 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 HIST3H2BBQ8N257 126 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 LOC107984640A0A0U1RRK4 108 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 SPATA12Q7Z6I5 190 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 C1orf158Q8N1D5 194 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 B5MCH6 92 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 Q6ZTC4 211 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 NRACQ8N912 160 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 FAM236AA0A1B0GUQ0 79 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 FAM236BA0A1B0GV22 79 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 UFSP1Q6NVU6 142 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 PLA2G2EQ9NZK7 142 aa3.75□□□□□ -1.81
SCN1A-218ENST00000640036 IGLV3-1P01715 115 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 WFDC10AQ9H1F0 79 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 V9GYV3 84 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 H2BFSP57053 126 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 ASPHD1Q5U4P2 390 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 LINC00336Q6ZUF6 198 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 COX7BP24311 80 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 MRGPRG-AS1Q2M3A8 158 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 C18orf65Q6ZTR6 163 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 TINCRA0A1B0GVN0 87 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 IGLC2P0DOY2 106 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 IGLC3P0DOY3 106 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 EDN2P20800 178 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 Q6ZRM9 215 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 FLNAP21333 2647 aaKnown RBP3.74□□□□□ -1.81
SCN1A-218ENST00000640036 SMKR1H3BMG3 65 aa3.74□□□□□ -1.81
SCN1A-218ENST00000640036 DHRS4-AS1Q9P1J3 65 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 C19orf71A6NCJ1 209 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 C11orf52Q96A22 123 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 CLUHP3Q96NS8 147 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 IGKV1D-37A0A075B6S9 117 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 XGP55808 180 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 RNASE13Q5GAN3 156 aaKnown RBP3.73□□□□□ -1.81
SCN1A-218ENST00000640036 FAM19A3Q7Z5A8 133 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 TRBV6-4A0A1B0GX49 114 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 WI2-2373I1.2A0A1W2PRP0 233 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 MED14OSP0DP75 135 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 KRTAP27-1Q3LI81 207 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 Q5BKY6 102 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 HIGD1BQ9P298 99 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 IGLV4-69A0A075B6H9 119 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 TRBV6-1A0A0K0K1D8 114 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 C20orf197Q8N268 126 aa3.73□□□□□ -1.81
SCN1A-218ENST00000640036 TEX15Q9BXT5 2789 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 P0C879 139 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 FAM19A5Q7Z5A7 132 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-218ENST00000640036 TMEM254Q8TBM7 123 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 CENPEQ02224 2701 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms