RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DGAT2L7PQ6IED9 249 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 OR5A1Q8NGJ0 315 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 TMEM101Q96IK0 257 aa7.38□□□□□ -1.23
CLN3-248ENST00000636355 A0A0J9YWU9 116 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 hDV102S1A0JD36 115 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 DLEU1O43261 78 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 HERVK_113P61574 105 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 DEFA6Q01524 100 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 AMMECR1LQ6DCA0 310 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 FAM19A3Q7Z5A8 133 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 C11orf45Q8TAV5 145 aa7.37□□□□□ -1.23
CLN3-248ENST00000636355 A0A1B0GUV1 79 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 TINCRA0A1B0GVN0 87 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 COX8AP10176 69 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 ZC2HC1BQ5TFG8 222 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 SLC25A34Q6PIV7 304 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 Q6ZUT4 128 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 FAM104AQ969W3 186 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 CHAC1Q9BUX1 264 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 PRO1933Q9H354 126 aa7.36□□□□□ -1.23
CLN3-248ENST00000636355 PCP4L1A6NKN8 68 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 PRB2P02812 416 aaPredicted RBP7.35□□□□□ -1.23
CLN3-248ENST00000636355 MAJINQ3KP22 176 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 DEFB121Q5J5C9 76 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 LELP1Q5T871 98 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 Q6ZTC4 211 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 C15orf53Q8NAA6 179 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 MRAPQ8TCY5 172 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 DEFB104AQ8WTQ1 72 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 CHCHD5Q9BSY4 110 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 CDC42SE2Q9NRR3 84 aa7.35□□□□□ -1.23
CLN3-248ENST00000636355 IGLV5-45A0A087WSX0 123 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 TRAV10A0A0B4J240 114 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 A0A0J9YY99 117 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 E9PLD3 99 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 CCL25O15444 150 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 NHLRC4P0CG21 123 aaPredicted RBP7.34□□□□□ -1.23
CLN3-248ENST00000636355 HTN3P15516 51 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 UBE2D1P51668 147 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 HERVK_113P63121 156 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 ANKRD39Q53RE8 183 aa7.34□□□□□ -1.23
CLN3-248ENST00000636355 A0A096LPF7 62 aa7.33□□□□□ -1.24
CLN3-248ENST00000636355 BOD1L2Q8IYS8 172 aa7.33□□□□□ -1.24
CLN3-248ENST00000636355 STPG4Q8N801 248 aa7.33□□□□□ -1.24
CLN3-248ENST00000636355 OPRPNQ99935 248 aaPredicted RBP7.33□□□□□ -1.24
CLN3-248ENST00000636355 MRPS16Q9Y3D3 137 aaKnown RBP7.33□□□□□ -1.24
CLN3-248ENST00000636355 STAB2Q8WWQ8 2551 aa7.32□□□□□ -1.24
CLN3-248ENST00000636355 DEFB131BA0A096LNP1 70 aa7.32□□□□□ -1.24
CLN3-248ENST00000636355 H3BRM9 83 aa7.32□□□□□ -1.24
CLN3-248ENST00000636355 SIVA1O15304 175 aa7.32□□□□□ -1.24
CLN3-248ENST00000636355 ZNF22P17026 224 aaPredicted RBP7.32□□□□□ -1.24
CLN3-248ENST00000636355 HNRNPA3P51991 378 aaKnown RBP7.32□□□□□ -1.24
CLN3-248ENST00000636355 CEMP1Q6PRD7 247 aaPredicted RBP7.32□□□□□ -1.24
CLN3-248ENST00000636355 LINC00587B1AMM8 73 aa7.31□□□□□ -1.24
CLN3-248ENST00000636355 NMUP48645 174 aa7.31□□□□□ -1.24
CLN3-248ENST00000636355 TMEM170BQ5T4T1 132 aa7.31□□□□□ -1.24
CLN3-248ENST00000636355 C14orf144Q96I85 54 aa7.31□□□□□ -1.24
CLN3-248ENST00000636355 GEMIN7Q9H840 131 aaKnown RBP7.31□□□□□ -1.24
CLN3-248ENST00000636355 TRAV8-6A0A0B4J262 113 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 A0A0J9YXV3 536 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 TMEM223A0PJW6 202 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 NANOS2P60321 138 aaKnown RBP7.3□□□□□ -1.24
CLN3-248ENST00000636355 GAGE6Q13070 117 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 LBHQ53QV2 105 aaPredicted RBP7.3□□□□□ -1.24
CLN3-248ENST00000636355 PLEKHB2Q96CS7 222 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 HIGD1BQ9P298 99 aa7.3□□□□□ -1.24
CLN3-248ENST00000636355 RBX1P62877 108 aa7.29□□□□□ -1.24
CLN3-248ENST00000636355 IGKV2D-26A0A0A0MRZ7 120 aa7.28□□□□□ -1.24
CLN3-248ENST00000636355 LEPROTO15243 131 aa7.28□□□□□ -1.24
CLN3-248ENST00000636355 MPV17L2Q567V2 206 aa7.28□□□□□ -1.24
CLN3-248ENST00000636355 RNASE13Q5GAN3 156 aaKnown RBP7.28□□□□□ -1.24
CLN3-248ENST00000636355 LINC00242Q5T6M2 205 aa7.28□□□□□ -1.24
CLN3-248ENST00000636355 LINC00469Q8N7U9 141 aa7.28□□□□□ -1.24
CLN3-248ENST00000636355 IGLV4-60A0A075B6I1 120 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 M0R143 59 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 LYPD5Q6UWN5 251 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 PCP2Q8IVA1 136 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 LINC01561Q8N1V8 128 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 MEGF8Q7Z7M0 2845 aa7.27□□□□□ -1.25
CLN3-248ENST00000636355 TRAV13-1A0A0B4J241 112 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 IGHV1-58A0A0C4DH39 117 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 IGLV5-39A0A0G2JS06 123 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 MYMXA0A1B0GTQ4 84 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 J3QQQ9 107 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 LGALS3P17931 250 aaKnown RBP7.26□□□□□ -1.25
CLN3-248ENST00000636355 SFTA2Q6UW10 78 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 C2orf91Q6ZV80 131 aa7.26□□□□□ -1.25
CLN3-248ENST00000636355 LINC00959A0A1B0GUT2 108 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 TMEM262E9PQX1 116 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 HSD52Q0P140 79 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 SS18Q15532 418 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 TAL2Q16559 108 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 PRR34Q9NV39 138 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 CDKN2A-AS1Q9UH64 79 aa7.25□□□□□ -1.25
CLN3-248ENST00000636355 ZNF815PA8K554 130 aa7.24□□□□□ -1.25
CLN3-248ENST00000636355 SMIM1B2RUZ4 78 aa7.24□□□□□ -1.25
CLN3-248ENST00000636355 IGHV3-30-3P0DP02 117 aa7.24□□□□□ -1.25
CLN3-248ENST00000636355 TCTAP57738 103 aa7.24□□□□□ -1.25
CLN3-248ENST00000636355 LINC01556Q5JQF7 62 aa7.24□□□□□ -1.25
CLN3-248ENST00000636355 ZFAND6Q6FIF0 208 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms