RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PMCHL1Q16048 86 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 AMTNQ6UX39 209 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 C12orf54Q6X4T0 127 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 C9orf85Q96MD7 179 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 CITED1Q99966 193 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 NDUFAF3Q9BU61 184 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 MAP1LC3CQ9BXW4 147 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 NIT2Q9NQR4 276 aa3.28□□□□□ -1.88
VPS29-212ENST00000621131 DNAH7Q8WXX0 4024 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 LOC389332A0A1B0GUA5 103 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 A8MWV9 139 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 HSBP1L1C9JCN9 74 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 M0R2P5 195 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 NCR2O95944 276 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 HBDP02042 147 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 RNASE3P12724 160 aaKnown RBP3.27□□□□□ -1.89
VPS29-212ENST00000621131 HTN1P15515 57 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 EVI2AP22794 236 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 ORMDL2Q53FV1 153 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 FAM74A4Q5TZK3 123 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 C14orf178Q8N769 122 aaPredicted RBP3.27□□□□□ -1.89
VPS29-212ENST00000621131 C3orf56Q8N813 242 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 Q8N8P6 123 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 PTH2Q96A98 100 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 C16orf74Q96GX8 76 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 C20orf78Q9BR46 151 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 TMEM70Q9BUB7 260 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 ST20Q9HBF5 79 aa3.27□□□□□ -1.89
VPS29-212ENST00000621131 IGHV3OR16-12A0A075B7B8 117 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 IGHV1-24A0A0C4DH33 117 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 PCP4L1A6NKN8 68 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 SMKR1H3BMG3 65 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 NPYP01303 97 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 IFI27P40305 119 aaPredicted RBP3.26□□□□□ -1.89
VPS29-212ENST00000621131 APOC4P55056 127 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 PKIAP61925 76 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 CXCL6P80162 114 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 DEFA6Q01524 100 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 LAGE3Q14657 143 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 RRN3P1Q2M238 152 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 PYY3Q5JQD4 70 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 PET117Q6UWS5 81 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 FAM19A2Q8N3H0 131 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 RNF185Q96GF1 192 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 KIR2DL4Q99706 377 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 VAMP8Q9BV40 100 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 XCL2Q9UBD3 114 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 TENM2Q9NT68 2774 aa3.26□□□□□ -1.89
VPS29-212ENST00000621131 TRAV26-2A0A0B4J265 109 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1BA6NDE4 496 aaKnown RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1EA6NEQ0 496 aaKnown RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 H0Y8G0 127 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 CRXO43186 299 aaPredicted RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 NUPR1O60356 82 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 ATP5LO75964 103 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1DP0C7P1 496 aaKnown RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 C3orf79P0CE67 100 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 FCER1GP30273 86 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 RPL32P62910 135 aaKnown RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 Q6ZQT7 251 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 TMEM263Q8WUH6 116 aaKnown RBP3.25□□□□□ -1.89
VPS29-212ENST00000621131 SMIM2Q9BVW6 85 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 STAB2Q8WWQ8 2551 aa3.25□□□□□ -1.89
VPS29-212ENST00000621131 TRGV1A0A0A0MS02 117 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 KIR2DL5BA0A0G2JN68 375 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 KIR2DL5BA0A0G2JPC4 375 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 LINC01546A6NGU7 62 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 SMIM9A6NGZ8 99 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.24□□□□□ -1.89
VPS29-212ENST00000621131 SYS1-DBNDD2H3BUS1 97 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 SMAGPQ0VAQ4 97 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 LGALS9BQ3B8N2 356 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 ZFP2Q6ZN57 461 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 ZNF705AQ6ZN79 300 aaPredicted RBP3.24□□□□□ -1.89
VPS29-212ENST00000621131 Q6ZN92 141 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 KIR2DL5AQ8N109 375 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 DEFB125Q8N687 156 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 OR4C5Q8NGB2 326 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 KIR2DL5BQ8NHK3 375 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 IFI27L1Q96BM0 104 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 DNAJC30Q96LL9 226 aa3.24□□□□□ -1.89
VPS29-212ENST00000621131 TRGV2A0A075B6R0 118 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 TRAV4A0A0B4J268 109 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 TRBV6-5A0A0K0K1A5 114 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 I3L3M4 83 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 RS1O15537 224 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1A1P0DJD3 496 aaKnown RBP3.23□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1CP0DJD4 496 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 RBMY1FQ15415 496 aaKnown RBP3.23□□□□□ -1.89
VPS29-212ENST00000621131 RHOHQ15669 191 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 SPATA45Q537H7 98 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 TEX43Q6ZNM6 134 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 RPL39LQ96EH5 51 aaKnown RBP3.23□□□□□ -1.89
VPS29-212ENST00000621131 SCGB3A1Q96QR1 104 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 EDA2RQ9HAV5 297 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 MRPL16Q9NX20 251 aaKnown RBP3.23□□□□□ -1.89
VPS29-212ENST00000621131 CYSLTR1Q9Y271 337 aa3.23□□□□□ -1.89
VPS29-212ENST00000621131 TRGV4A0A0C4DH28 118 aa3.22□□□□□ -1.89
VPS29-212ENST00000621131 SDHAF1A6NFY7 115 aa3.22□□□□□ -1.89
VPS29-212ENST00000621131 CRYGDP07320 174 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms