RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ADCYAP1P18509 176 aa10.41□□□□□ -0.74
BRCA1-228ENST00000618469 UQCC3Q6UW78 93 aa10.41□□□□□ -0.74
BRCA1-228ENST00000618469 OR5A1Q8NGJ0 315 aa10.41□□□□□ -0.74
BRCA1-228ENST00000618469 KIR2DL4Q99706 377 aa10.41□□□□□ -0.74
BRCA1-228ENST00000618469 GAGE12HA6NDE8 117 aa10.4□□□□□ -0.74
BRCA1-228ENST00000618469 TNFRSF6BO95407 300 aa10.4□□□□□ -0.74
BRCA1-228ENST00000618469 Q6ZSA8 131 aa10.4□□□□□ -0.74
BRCA1-228ENST00000618469 NPYP01303 97 aa10.39□□□□□ -0.75
BRCA1-228ENST00000618469 MRPL52Q86TS9 123 aaKnown RBP10.39□□□□□ -0.75
BRCA1-228ENST00000618469 CHCHD10Q8WYQ3 142 aaPredicted RBP10.39□□□□□ -0.75
BRCA1-228ENST00000618469 C20orf78Q9BR46 151 aa10.39□□□□□ -0.75
BRCA1-228ENST00000618469 TRBV24-1A0A075B6N3 115 aa10.38□□□□□ -0.75
BRCA1-228ENST00000618469 hDV102S1A0JD36 115 aa10.38□□□□□ -0.75
BRCA1-228ENST00000618469 TMEM218A2RU14 115 aa10.38□□□□□ -0.75
BRCA1-228ENST00000618469 COMMD7Q86VX2 200 aa10.38□□□□□ -0.75
BRCA1-228ENST00000618469 SMIM2Q9BVW6 85 aa10.38□□□□□ -0.75
BRCA1-228ENST00000618469 FAM229AH3BQW9 127 aa10.37□□□□□ -0.75
BRCA1-228ENST00000618469 PPBPP02775 128 aa10.37□□□□□ -0.75
BRCA1-228ENST00000618469 RPL32P62910 135 aaKnown RBP10.37□□□□□ -0.75
BRCA1-228ENST00000618469 ORMDL3Q8N138 153 aa10.37□□□□□ -0.75
BRCA1-228ENST00000618469 CLRN3Q8NCR9 226 aa10.37□□□□□ -0.75
BRCA1-228ENST00000618469 DGAT2L7PQ6IED9 249 aa10.36□□□□□ -0.75
BRCA1-228ENST00000618469 CDC42SE2Q9NRR3 84 aa10.36□□□□□ -0.75
BRCA1-228ENST00000618469 LINC00959A0A1B0GUT2 108 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 PHOX2AO14813 284 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 XCL1P47992 114 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 SMAGPQ0VAQ4 97 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 SCXQ7RTU7 201 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 ZNF664Q8N3J9 261 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 C15orf56Q8N910 161 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 PRELID3AQ96N28 172 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 AP5S1Q9NUS5 200 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 UBE2D4Q9Y2X8 147 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 UBR4Q5T4S7 5183 aa10.35□□□□□ -0.75
BRCA1-228ENST00000618469 TCAPO15273 167 aa10.34□□□□□ -0.75
BRCA1-228ENST00000618469 CCL25O15444 150 aa10.34□□□□□ -0.75
BRCA1-228ENST00000618469 RNASE13Q5GAN3 156 aaKnown RBP10.34□□□□□ -0.75
BRCA1-228ENST00000618469 TMEM136Q6ZRR5 245 aa10.34□□□□□ -0.75
BRCA1-228ENST00000618469 TMEM18Q96B42 140 aa10.34□□□□□ -0.75
BRCA1-228ENST00000618469 CNBPP62633 177 aaKnown RBP10.33□□□□□ -0.76
BRCA1-228ENST00000618469 FOXI1Q12951 378 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 HIGD2BQ4VC39 106 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 CFAP161Q6P656 301 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 Q6ZUT4 128 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 C9orf163Q8N9P6 203 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 SEC11CQ9BY50 192 aa10.33□□□□□ -0.76
BRCA1-228ENST00000618469 RPL39P62891 51 aaKnown RBP10.32□□□□□ -0.76
BRCA1-228ENST00000618469 SS18Q15532 418 aa10.32□□□□□ -0.76
BRCA1-228ENST00000618469 CHAC1Q9BUX1 264 aa10.32□□□□□ -0.76
BRCA1-228ENST00000618469 CSDC2Q9Y534 153 aaKnown RBP10.32□□□□□ -0.76
BRCA1-228ENST00000618469 IMMP2LQ96T52 175 aa10.31□□□□□ -0.76
BRCA1-228ENST00000618469 TIMM21Q9BVV7 248 aa10.31□□□□□ -0.76
BRCA1-228ENST00000618469 CTDSP1Q9GZU7 261 aa10.31□□□□□ -0.76
BRCA1-228ENST00000618469 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.3□□□□□ -0.76
BRCA1-228ENST00000618469 LINC00528Q8N1L1 170 aa10.3□□□□□ -0.76
BRCA1-228ENST00000618469 MAP1LC3AQ9H492 121 aa10.3□□□□□ -0.76
BRCA1-228ENST00000618469 LAMTOR2Q9Y2Q5 125 aa10.3□□□□□ -0.76
BRCA1-228ENST00000618469 GVQW2A0A096LPI5 108 aaPredicted RBP10.29□□□□□ -0.76
BRCA1-228ENST00000618469 TRAV13-1A0A0B4J241 112 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 LOC389332A0A1B0GUA5 103 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 SLPIP03973 132 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 RAB5AP20339 215 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 CD164L2Q6UWJ8 174 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 CIRBP-AS1Q8TBR5 109 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 SPANXA1Q9NS26 97 aa10.29□□□□□ -0.76
BRCA1-228ENST00000618469 IGHV3-64A0A075B6Q5 118 aa10.28□□□□□ -0.76
BRCA1-228ENST00000618469 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.28□□□□□ -0.76
BRCA1-228ENST00000618469 TRAV9-1A0A075B6T8 112 aa10.27□□□□□ -0.77
BRCA1-228ENST00000618469 IGHV1-58A0A0C4DH39 117 aa10.27□□□□□ -0.77
BRCA1-228ENST00000618469 C1orf196B1AJZ1 125 aa10.27□□□□□ -0.77
BRCA1-228ENST00000618469 S100PP25815 95 aa10.27□□□□□ -0.77
BRCA1-228ENST00000618469 SDIM1Q6ZPB5 146 aa10.26□□□□□ -0.77
BRCA1-228ENST00000618469 PANO1I0J062 215 aa10.25□□□□□ -0.77
BRCA1-228ENST00000618469 IFI27P40305 119 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-228ENST00000618469 C10orf91Q5T1B1 145 aa10.25□□□□□ -0.77
BRCA1-228ENST00000618469 OPRPNQ99935 248 aaPredicted RBP10.25□□□□□ -0.77
BRCA1-228ENST00000618469 CARHSP1Q9Y2V2 147 aaKnown RBP10.25□□□□□ -0.77
BRCA1-228ENST00000618469 PRSS47A8MTI9 375 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 KRTAP29-1A8MX34 341 aaPredicted RBP10.24□□□□□ -0.77
BRCA1-228ENST00000618469 COX7A2LO14548 114 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 PLA2G1BP04054 148 aaKnown RBP10.24□□□□□ -0.77
BRCA1-228ENST00000618469 MALP21145 153 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 MRPS36P82909 103 aaKnown RBP10.24□□□□□ -0.77
BRCA1-228ENST00000618469 RHEBQ15382 184 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 Q8N8P6 123 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 FAM104AQ969W3 186 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 LINC00526Q96FQ7 95 aa10.24□□□□□ -0.77
BRCA1-228ENST00000618469 IFITM10A6NMD0 228 aa10.23□□□□□ -0.77
BRCA1-228ENST00000618469 CHTF8P0CG12 524 aa10.23□□□□□ -0.77
BRCA1-228ENST00000618469 KIAA1644Q3SXP7 199 aa10.23□□□□□ -0.77
BRCA1-228ENST00000618469 SLC7A5P1Q8MH63 180 aa10.23□□□□□ -0.77
BRCA1-228ENST00000618469 RPS10P5Q9NQ39 176 aa10.23□□□□□ -0.77
BRCA1-228ENST00000618469 ZNF561-AS1K7EIQ3 104 aa10.22□□□□□ -0.77
BRCA1-228ENST00000618469 COX6A2Q02221 97 aa10.21□□□□□ -0.77
BRCA1-228ENST00000618469 CIRBPQ14011 172 aaKnown RBP10.21□□□□□ -0.77
BRCA1-228ENST00000618469 ORMDL2Q53FV1 153 aa10.21□□□□□ -0.77
BRCA1-228ENST00000618469 SERTAD4-AS1Q5TG53 156 aa10.21□□□□□ -0.77
BRCA1-228ENST00000618469 C2orf66Q6UXQ4 117 aa10.21□□□□□ -0.77
BRCA1-228ENST00000618469 C5orf38Q86SI9 138 aa10.21□□□□□ -0.77
BRCA1-228ENST00000618469 CARD19Q96LW7 228 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms