RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 CEBPGP53567 150 aa12.96□□□□□ -0.33
TRAPPC3-208ENST00000616074 BORCS7Q96B45 105 aa12.96□□□□□ -0.33
TRAPPC3-208ENST00000616074 LINC00474Q9P2X8 69 aa12.96□□□□□ -0.33
TRAPPC3-208ENST00000616074 RNF213Q63HN8 5207 aa12.96□□□□□ -0.34
TRAPPC3-208ENST00000616074 POLR2KP53803 58 aaKnown RBP12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 ODF1Q14990 250 aa12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 SS18Q15532 418 aa12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 ALKAL2Q6UX46 152 aa12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 TMEM191AQ9H0A3 160 aa12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 CDC42SE2Q9NRR3 84 aa12.95□□□□□ -0.34
TRAPPC3-208ENST00000616074 BLOC1S1P78537 153 aa12.94□□□□□ -0.34
TRAPPC3-208ENST00000616074 CD164L2Q6UWJ8 174 aa12.94□□□□□ -0.34
TRAPPC3-208ENST00000616074 MRPL52Q86TS9 123 aaKnown RBP12.94□□□□□ -0.34
TRAPPC3-208ENST00000616074 PKIGQ9Y2B9 76 aa12.94□□□□□ -0.34
TRAPPC3-208ENST00000616074 TRBV27A0A0K0K1C4 114 aa12.93□□□□□ -0.34
TRAPPC3-208ENST00000616074 A0A1B0GUT8 65 aa12.93□□□□□ -0.34
TRAPPC3-208ENST00000616074 HIGD1CA8MV81 97 aa12.93□□□□□ -0.34
TRAPPC3-208ENST00000616074 TSKUQ8WUA8 353 aa12.93□□□□□ -0.34
TRAPPC3-208ENST00000616074 FAM210AQ96ND0 272 aa12.93□□□□□ -0.34
TRAPPC3-208ENST00000616074 C7orf77A4D0Y5 90 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 ZNF561-AS1K7EIQ3 104 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 RAB4AP20338 218 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 SYCNQ0VAF6 134 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 AMN1Q8IY45 258 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 ZNF664Q8N3J9 261 aa12.92□□□□□ -0.34
TRAPPC3-208ENST00000616074 SPINK6Q6UWN8 80 aa12.91□□□□□ -0.34
TRAPPC3-208ENST00000616074 LINC01551Q86U37 167 aa12.91□□□□□ -0.34
TRAPPC3-208ENST00000616074 A0A0J9YXV3 536 aa12.9□□□□□ -0.34
TRAPPC3-208ENST00000616074 CAMPP49913 170 aa12.9□□□□□ -0.34
TRAPPC3-208ENST00000616074 SMIM7Q9BQ49 75 aa12.9□□□□□ -0.34
TRAPPC3-208ENST00000616074 SMKR1H3BMG3 65 aa12.89□□□□□ -0.35
TRAPPC3-208ENST00000616074 PTTG1IPP53801 180 aa12.88□□□□□ -0.35
TRAPPC3-208ENST00000616074 Q6ZRP5 223 aa12.88□□□□□ -0.35
TRAPPC3-208ENST00000616074 OSTCQ9NRP0 149 aa12.88□□□□□ -0.35
TRAPPC3-208ENST00000616074 IGLV4-69A0A075B6H9 119 aa12.87□□□□□ -0.35
TRAPPC3-208ENST00000616074 SRSF9Q13242 221 aaKnown RBP eCLIP12.87□□□□□ -0.35
TRAPPC3-208ENST00000616074 REG3GQ6UW15 175 aa12.87□□□□□ -0.35
TRAPPC3-208ENST00000616074 EIF5A2Q9GZV4 153 aaKnown RBP12.87□□□□□ -0.35
TRAPPC3-208ENST00000616074 VCYO14598 125 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 FCER1GP30273 86 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 KRTAP10-8P60410 259 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 GAGE2BQ13066 116 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 RNASE13Q5GAN3 156 aaKnown RBP12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 AKAP14Q86UN6 197 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 ISOC2Q96AB3 205 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 UBE2D4Q9Y2X8 147 aa12.86□□□□□ -0.35
TRAPPC3-208ENST00000616074 LOC107984640A0A0U1RRK4 108 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 ZNF727A8MUV8 499 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 C1orf196B1AJZ1 125 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 COX7A2LO14548 114 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 MALP21145 153 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 NRACQ8N912 160 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 V9GYV3 84 aa12.85□□□□□ -0.35
TRAPPC3-208ENST00000616074 SUMO2P61956 95 aaKnown RBP12.84□□□□□ -0.35
TRAPPC3-208ENST00000616074 RIGQ13278 110 aa12.84□□□□□ -0.35
TRAPPC3-208ENST00000616074 NUP35Q8NFH5 326 aa12.84□□□□□ -0.35
TRAPPC3-208ENST00000616074 CSDC2Q9Y534 153 aaKnown RBP12.84□□□□□ -0.35
TRAPPC3-208ENST00000616074 SRP19P09132 144 aaKnown RBP12.83□□□□□ -0.36
TRAPPC3-208ENST00000616074 CAMK2N2Q96S95 79 aa12.83□□□□□ -0.36
TRAPPC3-208ENST00000616074 TRAV13-1A0A0B4J241 112 aa12.82□□□□□ -0.36
TRAPPC3-208ENST00000616074 A0A1W2PNN7 141 aa12.82□□□□□ -0.36
TRAPPC3-208ENST00000616074 PPP1R17O96001 155 aa12.81□□□□□ -0.36
TRAPPC3-208ENST00000616074 SMAGPQ0VAQ4 97 aa12.81□□□□□ -0.36
TRAPPC3-208ENST00000616074 Q6ZUT4 128 aa12.81□□□□□ -0.36
TRAPPC3-208ENST00000616074 KIR2DL4Q99706 377 aa12.81□□□□□ -0.36
TRAPPC3-208ENST00000616074 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.8□□□□□ -0.36
TRAPPC3-208ENST00000616074 APOMO95445 188 aa12.8□□□□□ -0.36
TRAPPC3-208ENST00000616074 C5orf38Q86SI9 138 aa12.8□□□□□ -0.36
TRAPPC3-208ENST00000616074 C2orf48Q96LS8 159 aa12.8□□□□□ -0.36
TRAPPC3-208ENST00000616074 hCG_2014768A0A024R1R8 64 aa12.79□□□□□ -0.36
TRAPPC3-208ENST00000616074 MRPL51Q4U2R6 128 aaKnown RBP12.79□□□□□ -0.36
TRAPPC3-208ENST00000616074 PPP1R2P9O14990 202 aa12.78□□□□□ -0.36
TRAPPC3-208ENST00000616074 C9orf116Q5BN46 136 aaPredicted RBP12.78□□□□□ -0.36
TRAPPC3-208ENST00000616074 FAM104BQ5XKR9 115 aa12.78□□□□□ -0.36
TRAPPC3-208ENST00000616074 NAT8BQ9UHF3 227 aa12.78□□□□□ -0.36
TRAPPC3-208ENST00000616074 RPL18AQ02543 176 aaKnown RBP12.77□□□□□ -0.37
TRAPPC3-208ENST00000616074 SPAG11BQ08648 103 aa12.77□□□□□ -0.37
TRAPPC3-208ENST00000616074 TIMM21Q9BVV7 248 aa12.77□□□□□ -0.37
TRAPPC3-208ENST00000616074 PSORS1C2Q9UIG4 136 aa12.77□□□□□ -0.37
TRAPPC3-208ENST00000616074 RPL23P62829 140 aaKnown RBP12.76□□□□□ -0.37
TRAPPC3-208ENST00000616074 TMEM18Q96B42 140 aa12.76□□□□□ -0.37
TRAPPC3-208ENST00000616074 OPRPNQ99935 248 aaPredicted RBP12.76□□□□□ -0.37
TRAPPC3-208ENST00000616074 TMEM241Q24JQ0 296 aa12.75□□□□□ -0.37
TRAPPC3-208ENST00000616074 MT-ND6P03923 174 aa12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 RPL39P62891 51 aaKnown RBP12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 FAM74A3Q4VXF1 159 aa12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 PHF5AQ7RTV0 110 aaKnown RBP12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 FAM104AQ969W3 186 aa12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 C20orf78Q9BR46 151 aa12.74□□□□□ -0.37
TRAPPC3-208ENST00000616074 TRBV24-1A0A075B6N3 115 aa12.73□□□□□ -0.37
TRAPPC3-208ENST00000616074 SMIM27A0A1W2PRY6 76 aa12.73□□□□□ -0.37
TRAPPC3-208ENST00000616074 LINC00862A6NCI5 91 aa12.73□□□□□ -0.37
TRAPPC3-208ENST00000616074 ADIRFQ15847 76 aa12.73□□□□□ -0.37
TRAPPC3-208ENST00000616074 OR10D4PQ8NGN7 298 aa12.73□□□□□ -0.37
TRAPPC3-208ENST00000616074 CKS2P33552 79 aa12.72□□□□□ -0.37
TRAPPC3-208ENST00000616074 RPL32P62910 135 aaKnown RBP12.72□□□□□ -0.37
TRAPPC3-208ENST00000616074 RNF151Q2KHN1 245 aa12.72□□□□□ -0.37
TRAPPC3-208ENST00000616074 LPAP08519 4548 aa12.71□□□□□ -0.37
TRAPPC3-208ENST00000616074 TNFRSF6BO95407 300 aa12.71□□□□□ -0.37
TRAPPC3-208ENST00000616074 C1orf137Q5JT78 98 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms