RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IGHV3-30-3P0DP02 117 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 IGHV3-49A0A0A0MS15 119 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 ZNF561-AS1K7EIQ3 104 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 LMO4P61968 165 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 SS18Q15532 418 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 GPHB5Q86YW7 130 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 ZNF580Q9UK33 172 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 TRBV7-6A0A0J9YX20 115 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 CCKP06307 115 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 CD164Q04900 197 aa7.51□□□□□ -1.21
VPS39-214ENST00000614932 IGHV7-81A0A0B4J1V7 117 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 TIMM17BO60830 172 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 NXPH4O95158 308 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 IGHV1-69P01742 117 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 NPBQ8NG41 125 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 ABCA2Q9BZC7 2435 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 CSPG4Q6UVK1 2322 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 ZNF462Q96JM2 2506 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 PRAC2D3DTV9 90 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 Q96MF0 132 aa7.5□□□□□ -1.21
VPS39-214ENST00000614932 F8W735 103 aaPredicted RBP7.49□□□□□ -1.21
VPS39-214ENST00000614932 ATP6V0E1O15342 81 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 RPL28P46779 137 aaKnown RBP7.49□□□□□ -1.21
VPS39-214ENST00000614932 RBM3P98179 157 aaKnown RBP7.49□□□□□ -1.21
VPS39-214ENST00000614932 C1orf158Q8N1D5 194 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 Q8N9W7 124 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 RNF5Q99942 180 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 ZFAND3Q9H8U3 227 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 USP9YO00507 2555 aaPredicted RBP7.49□□□□□ -1.21
VPS39-214ENST00000614932 IGLV11-55A0A075B6I3 123 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 TRAV23DV6A0A075B6W5 121 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 IGHV4-61A0A0C4DH41 118 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 HILS1P60008 231 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 LY6EQ16553 131 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 NDUFA12Q9UI09 145 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 SMAD5-AS1Q9Y6J3 95 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 ZANQ9Y493 2812 aa7.49□□□□□ -1.21
VPS39-214ENST00000614932 VCYO14598 125 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 TRBV12-3P01733 135 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 Q8N2B8 174 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 LRRK2Q5S007 2527 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 A0A0J9YXV3 536 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 POLR2KP53803 58 aaKnown RBP7.48□□□□□ -1.21
VPS39-214ENST00000614932 MAPK1IP1LQ8NDC0 245 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 DEFB104AQ8WTQ1 72 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 CUBNO60494 3623 aa7.48□□□□□ -1.21
VPS39-214ENST00000614932 KLKP1Q107X0 134 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 C15orf32Q32M92 178 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 CCL19Q99731 98 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 Q8N6K4 173 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 OPRPNQ99935 248 aaPredicted RBP7.47□□□□□ -1.21
VPS39-214ENST00000614932 C14orf132Q9NPU4 83 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 DOPEY1Q5JWR5 2465 aa7.47□□□□□ -1.21
VPS39-214ENST00000614932 TRBV27A0A0K0K1C4 114 aa7.46□□□□□ -1.21
VPS39-214ENST00000614932 CLEC19AQ6UXS0 136 aa7.46□□□□□ -1.21
VPS39-214ENST00000614932 PRR15Q8IV56 129 aa7.46□□□□□ -1.21
VPS39-214ENST00000614932 USP24Q9UPU5 2620 aa7.46□□□□□ -1.21
VPS39-214ENST00000614932 IGHV4OR15-8A0A075B7B6 117 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 IGHV4-30-2A0A087WSY4 118 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 A0A087WW49 117 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 CTSGP08311 255 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 IGHV4-38-2P0DP08 117 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 SNRPD3P62318 126 aaKnown RBP7.46□□□□□ -1.22
VPS39-214ENST00000614932 CFHR3Q02985 330 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 FBN2P35556 2912 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 MINOS1Q5TGZ0 78 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 PHLDA3Q9Y5J5 127 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 MINOS1-NBL1R4GNA1 71 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 EPG5Q9HCE0 2579 aa7.46□□□□□ -1.22
VPS39-214ENST00000614932 TRAV7A0A075B6U4 112 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 ATP5EP56381 51 aaPredicted RBP7.45□□□□□ -1.22
VPS39-214ENST00000614932 ATP5EP2Q5VTU8 51 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 Q6ZRU5 148 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 ABCA12Q86UK0 2595 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 IGHV1-58A0A0C4DH39 117 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 F8WEM9 126 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 S100A4P26447 101 aaKnown RBP7.45□□□□□ -1.22
VPS39-214ENST00000614932 FAM218AQ96MZ4 157 aa7.45□□□□□ -1.22
VPS39-214ENST00000614932 BCE1O60756 84 aa7.44□□□□□ -1.22
VPS39-214ENST00000614932 S100A7L2Q5SY68 101 aa7.44□□□□□ -1.22
VPS39-214ENST00000614932 Q9HAA7 133 aa7.44□□□□□ -1.22
VPS39-214ENST00000614932 LAMTOR3Q9UHA4 124 aa7.44□□□□□ -1.22
VPS39-214ENST00000614932 DOPEY2Q9Y3R5 2298 aa7.43□□□□□ -1.22
VPS39-214ENST00000614932 OBSCN-AS1Q96MR7 158 aa7.43□□□□□ -1.22
VPS39-214ENST00000614932 PLAC8L1A1L4L8 177 aa7.43□□□□□ -1.22
VPS39-214ENST00000614932 MOB4Q9Y3A3 225 aa7.43□□□□□ -1.22
VPS39-214ENST00000614932 IGKV3-7A0A075B6H7 116 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 IGHV3-11P01762 117 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 MPLKIPQ8TAP9 179 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 PTPN13Q12923 2485 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 C9orf129Q5T035 196 aaKnown RBP7.42□□□□□ -1.22
VPS39-214ENST00000614932 BBC3Q96PG8 261 aaPredicted RBP7.42□□□□□ -1.22
VPS39-214ENST00000614932 NDUFC1O43677 76 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 WFDC9Q8NEX5 89 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 RMI2Q96E14 147 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 CCDC140Q96MF4 163 aa7.42□□□□□ -1.22
VPS39-214ENST00000614932 H3BUX3 64 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 SOCS3O14543 225 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 BLCAPP62952 87 aa7.41□□□□□ -1.22
VPS39-214ENST00000614932 C9orf47Q6ZRZ4 202 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms