RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 RPL39P62891 51 aaKnown RBP7.85□□□□□ -1.15
LINC00539-204ENST00000608957 JOSD1Q15040 202 aaPredicted RBP7.85□□□□□ -1.15
LINC00539-204ENST00000608957 PYY3Q5JQD4 70 aa7.85□□□□□ -1.15
LINC00539-204ENST00000608957 SCGB3A1Q96QR1 104 aa7.85□□□□□ -1.15
LINC00539-204ENST00000608957 CHCHD7Q9BUK0 85 aa7.85□□□□□ -1.15
LINC00539-204ENST00000608957 KRTAP17-1Q9BYP8 105 aa7.85□□□□□ -1.15
LINC00539-204ENST00000608957 GTSF1LQ9H1H1 148 aa7.85□□□□□ -1.15
LINC00539-204ENST00000608957 SYS1-DBNDD2H3BUS1 97 aa7.84□□□□□ -1.15
LINC00539-204ENST00000608957 MRPL23Q16540 153 aaKnown RBP7.84□□□□□ -1.15
LINC00539-204ENST00000608957 TMEM97Q5BJF2 176 aa7.84□□□□□ -1.15
LINC00539-204ENST00000608957 TTC32Q5I0X7 151 aa7.84□□□□□ -1.15
LINC00539-204ENST00000608957 Q6ZRN7 208 aaPredicted RBP7.84□□□□□ -1.15
LINC00539-204ENST00000608957 NTM-AS1Q6ZSK4 140 aa7.84□□□□□ -1.15
LINC00539-204ENST00000608957 ATP6V0E2Q8NHE4 81 aa7.84□□□□□ -1.15
LINC00539-204ENST00000608957 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.83□□□□□ -1.16
LINC00539-204ENST00000608957 IGKV2-29A2NJV5 120 aaPredicted RBP7.83□□□□□ -1.16
LINC00539-204ENST00000608957 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.83□□□□□ -1.16
LINC00539-204ENST00000608957 SIVA1O15304 175 aa7.83□□□□□ -1.16
LINC00539-204ENST00000608957 PET117Q6UWS5 81 aa7.83□□□□□ -1.16
LINC00539-204ENST00000608957 ERASQ7Z444 233 aa7.83□□□□□ -1.16
LINC00539-204ENST00000608957 Q8N976 141 aa7.83□□□□□ -1.16
LINC00539-204ENST00000608957 TIMM17AQ99595 171 aa7.83□□□□□ -1.16
LINC00539-204ENST00000608957 TRBV25-1A0A075B6N4 114 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 C20orf202A1L168 122 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 IGIPA6NJ69 53 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 H0Y8G0 127 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 SCGB1D1O95968 90 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 Q6ZN92 141 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 SH2D6Q7Z4S9 175 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 SPATA12Q7Z6I5 190 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 WFDC10BQ8IUB3 73 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 TMEM141Q96I45 108 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 TMEM243Q9BU79 118 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 LRP1BQ9NZR2 4599 aa7.82□□□□□ -1.16
LINC00539-204ENST00000608957 TRBV6-8A0A0A6YYG3 113 aa7.81□□□□□ -1.16
LINC00539-204ENST00000608957 BAALCQ8WXS3 180 aa7.81□□□□□ -1.16
LINC00539-204ENST00000608957 SPANXA1Q9NS26 97 aa7.81□□□□□ -1.16
LINC00539-204ENST00000608957 UBE2D4Q9Y2X8 147 aa7.81□□□□□ -1.16
LINC00539-204ENST00000608957 PYGO1Q9Y3Y4 419 aa7.81□□□□□ -1.16
LINC00539-204ENST00000608957 UBE2L6O14933 153 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 PRSS1P07477 247 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 NPSP0C0P6 89 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 KRTAP10-2P60368 255 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 SMAGPQ0VAQ4 97 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 LINC01545Q5VT33 79 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 C12orf57Q99622 126 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 DNAH5Q8TE73 4624 aa7.8□□□□□ -1.16
LINC00539-204ENST00000608957 IGLV4-3A0A075B6K6 122 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 TRAV12-1A0A0B4J245 112 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 H7C423 109 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 LINC00518Q8N0U6 118 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 TIMM21Q9BVV7 248 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 HSPG2P98160 4391 aa7.79□□□□□ -1.16
LINC00539-204ENST00000608957 RYR1P21817 5038 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 A0A087WX48 190 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 C16orf90A8MZG2 172 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 FGF6P10767 208 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 GAGE6Q13070 117 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 ODF1Q14990 250 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 PAPPA-AS1Q5QFB9 102 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 Q6ZUT4 128 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 MRPL52Q86TS9 123 aaKnown RBP7.78□□□□□ -1.16
LINC00539-204ENST00000608957 CHCHD5Q9BSY4 110 aa7.78□□□□□ -1.16
LINC00539-204ENST00000608957 DNAH10OSP0CZ25 163 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 ZNF25P17030 456 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-204ENST00000608957 MRPS36P82909 103 aaKnown RBP7.77□□□□□ -1.17
LINC00539-204ENST00000608957 PMVKQ15126 192 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 AMMECR1LQ6DCA0 310 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 TEX43Q6ZNM6 134 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 OPRPNQ99935 248 aaPredicted RBP7.77□□□□□ -1.17
LINC00539-204ENST00000608957 PMCHL2Q9BQD1 86 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 KRTAP4-5Q9BYR2 181 aa7.77□□□□□ -1.17
LINC00539-204ENST00000608957 CSDC2Q9Y534 153 aaKnown RBP7.77□□□□□ -1.17
LINC00539-204ENST00000608957 F8VRH5 84 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 FUSP35637 526 aaKnown RBP eCLIP7.76□□□□□ -1.17
LINC00539-204ENST00000608957 TIRAPP58753 221 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 LELP1Q5T871 98 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 ZC2HC1BQ5TFG8 222 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 DGAT2L7PQ6IED9 249 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 ATOH7Q8N100 152 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 OR5A1Q8NGJ0 315 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 TMEM101Q96IK0 257 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 CST9LQ9H4G1 147 aa7.76□□□□□ -1.17
LINC00539-204ENST00000608957 FAM104AQ969W3 186 aa7.75□□□□□ -1.17
LINC00539-204ENST00000608957 AMELXQ99217 191 aa7.75□□□□□ -1.17
LINC00539-204ENST00000608957 C2orf88Q9BSF0 95 aa7.75□□□□□ -1.17
LINC00539-204ENST00000608957 VCX2Q9H322 139 aa7.75□□□□□ -1.17
LINC00539-204ENST00000608957 MRPL35Q9NZE8 188 aaKnown RBP7.75□□□□□ -1.17
LINC00539-204ENST00000608957 CHTOPQ9Y3Y2 248 aaKnown RBP7.75□□□□□ -1.17
LINC00539-204ENST00000608957 APOBP04114 4563 aaKnown RBP7.75□□□□□ -1.17
LINC00539-204ENST00000608957 DPM2O94777 84 aa7.74□□□□□ -1.17
LINC00539-204ENST00000608957 IGKCP01834 107 aa7.74□□□□□ -1.17
LINC00539-204ENST00000608957 PKIAP61925 76 aa7.74□□□□□ -1.17
LINC00539-204ENST00000608957 S100A12P80511 92 aa7.74□□□□□ -1.17
LINC00539-204ENST00000608957 RNASE13Q5GAN3 156 aaKnown RBP7.74□□□□□ -1.17
LINC00539-204ENST00000608957 VAMP8Q9BV40 100 aa7.74□□□□□ -1.17
LINC00539-204ENST00000608957 PLNP26678 52 aa7.73□□□□□ -1.17
LINC00539-204ENST00000608957 LINC01556Q5JQF7 62 aa7.73□□□□□ -1.17
LINC00539-204ENST00000608957 ZNF664Q8N3J9 261 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms