RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 IGLV10-54A0A075B6I4 117 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 A0A087WYN8 130 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 TMSB15BA0A087X1C1 80 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 SMIM27A0A1W2PRY6 76 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 A8MWL6 223 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 K7EN84 100 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 PHOX2AO14813 284 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 GATCO43716 136 aaKnown RBP4.01□□□□□ -1.77
CUX1-220ENST00000607092 LTAP01374 205 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 MT-ND6P03923 174 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 TRGC2P03986 189 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 OR5AL1P0C617 328 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 CRIP1P50238 77 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 HNRNPA3P51991 378 aaKnown RBP4.01□□□□□ -1.77
CUX1-220ENST00000607092 COA6Q5JTJ3 125 aaKnown RBP4.01□□□□□ -1.77
CUX1-220ENST00000607092 SPACA4Q8TDM5 124 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 LINC01600Q96MT4 127 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 V9GYV3 84 aa4.01□□□□□ -1.77
CUX1-220ENST00000607092 XKRY2A2RUG3 117 aa4□□□□□ -1.77
CUX1-220ENST00000607092 UBE2L6O14933 153 aa4□□□□□ -1.77
CUX1-220ENST00000607092 SNAI2O43623 268 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BKO60814 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 S100A8P05109 93 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BJP06899 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BOP23527 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BBP33778 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 FOXA3P55318 350 aaPredicted RBP4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BDP58876 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 SNRPEP62304 92 aaKnown RBP4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BCP62807 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 GAGE6Q13070 117 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST2H2BEQ16778 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST2H2BFQ5QNW6 126 aaPredicted RBP4□□□□□ -1.77
CUX1-220ENST00000607092 SPINK6Q6UWN8 80 aa4□□□□□ -1.77
CUX1-220ENST00000607092 TSKUQ8WUA8 353 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BHQ93079 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BNQ99877 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 HIST1H2BMQ99879 126 aa4□□□□□ -1.77
CUX1-220ENST00000607092 TMEM243Q9BU79 118 aa4□□□□□ -1.77
CUX1-220ENST00000607092 GNB1LQ9BYB4 327 aa4□□□□□ -1.77
CUX1-220ENST00000607092 GFRA4Q9GZZ7 299 aa4□□□□□ -1.77
CUX1-220ENST00000607092 NAT8BQ9UHF3 227 aa4□□□□□ -1.77
CUX1-220ENST00000607092 TRAPPC1Q9Y5R8 145 aa4□□□□□ -1.77
CUX1-220ENST00000607092 TNXBP22105 4242 aa4□□□□□ -1.77
CUX1-220ENST00000607092 A0A0J9YXV3 536 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 C19orf71A6NCJ1 209 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 TRGC1P0CF51 173 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 NDUFA6P56556 154 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 RPS20P60866 119 aaKnown RBP3.99□□□□□ -1.77
CUX1-220ENST00000607092 FABP9Q0Z7S8 132 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 KRTAP26-1Q6PEX3 210 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 ATP5L2Q7Z4Y8 100 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 OR10AG1Q8NH19 301 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 GTSF1Q8WW33 167 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 PGLYRP4Q96LB8 373 aa3.99□□□□□ -1.77
CUX1-220ENST00000607092 A0A1B0GW15 77 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 F2Z2F3 143 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 PANO1I0J062 215 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 CACNG7P62955 275 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 PRR3P79522 188 aaKnown RBP3.98□□□□□ -1.77
CUX1-220ENST00000607092 COTL1Q14019 142 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 CLPSL2Q6UWE3 100 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 NTM-AS1Q6ZSK4 140 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 RNASE7Q9H1E1 156 aaKnown RBP3.98□□□□□ -1.77
CUX1-220ENST00000607092 RPP21Q9H633 154 aaKnown RBP3.98□□□□□ -1.77
CUX1-220ENST00000607092 KIF25-AS1Q9Y6Z4 181 aa3.98□□□□□ -1.77
CUX1-220ENST00000607092 H7C423 109 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 M0QY20 66 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 AMTP48728 403 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 MAJINQ3KP22 176 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 Q6ZRP5 223 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 LINC00518Q8N0U6 118 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 STPG4Q8N801 248 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 NUP35Q8NFH5 326 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 PACRGQ96M98 296 aaPredicted RBP3.97□□□□□ -1.77
CUX1-220ENST00000607092 NIT2Q9NQR4 276 aa3.97□□□□□ -1.77
CUX1-220ENST00000607092 GVQW2A0A096LPI5 108 aaPredicted RBP3.96□□□□□ -1.78
CUX1-220ENST00000607092 HIGD1CA8MV81 97 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 TRIAP1O43715 76 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 NCR2O95944 276 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 MGPP08493 103 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 ESDP10768 282 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 S100A2P29034 98 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 AKR1D1P51857 326 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 COX6A2Q02221 97 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 AMMECR1LQ6DCA0 310 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 TMEM136Q6ZRR5 245 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 HIST3H2BBQ8N257 126 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 C20orf203Q8NBC4 194 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 OR2D3Q8NGH3 330 aa3.96□□□□□ -1.78
CUX1-220ENST00000607092 IGKV2-24A0A0C4DH68 120 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 A0A0U1RQV1 116 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 A0A1B0GUT8 65 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 A0A1B0GXF2 115 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 GAGE12HA6NDE8 117 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 APCSP02743 223 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 CHTF8P0CG12 524 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 SMIM6P0DI80 62 aa3.95□□□□□ -1.78
CUX1-220ENST00000607092 ZNF25P17030 456 aaPredicted RBP3.95□□□□□ -1.78
CUX1-220ENST00000607092 KRTAP10-8P60410 259 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms