RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 C9orf163Q8N9P6 203 aa15.2■□□□□ 0.02
PTPRN-219ENST00000606213 C20orf78Q9BR46 151 aa15.2■□□□□ 0.02
PTPRN-219ENST00000606213 PLA2G1BP04054 148 aaKnown RBP15.19■□□□□ 0.02
PTPRN-219ENST00000606213 CLLU1Q5K131 121 aa15.19■□□□□ 0.02
PTPRN-219ENST00000606213 ATP5L2Q7Z4Y8 100 aa15.19■□□□□ 0.02
PTPRN-219ENST00000606213 MRPL52Q86TS9 123 aaKnown RBP15.19■□□□□ 0.02
PTPRN-219ENST00000606213 LINC00528Q8N1L1 170 aa15.19■□□□□ 0.02
PTPRN-219ENST00000606213 TMEM18Q96B42 140 aa15.19■□□□□ 0.02
PTPRN-219ENST00000606213 D6R8Y8 96 aa15.18■□□□□ 0.02
PTPRN-219ENST00000606213 SS18Q15532 418 aa15.18■□□□□ 0.02
PTPRN-219ENST00000606213 ANAPC16Q96DE5 110 aa15.18■□□□□ 0.02
PTPRN-219ENST00000606213 FAT1Q14517 4588 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 A0A1B0GXF2 115 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 TCAPO15273 167 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 TNFRSF6BO95407 300 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 XCL1P47992 114 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 CNBPP62633 177 aaKnown RBP15.17■□□□□ 0.02
PTPRN-219ENST00000606213 ZNF664Q8N3J9 261 aa15.17■□□□□ 0.02
PTPRN-219ENST00000606213 TRBV24-1A0A075B6N3 115 aa15.16■□□□□ 0.02
PTPRN-219ENST00000606213 PPBPP02775 128 aa15.16■□□□□ 0.02
PTPRN-219ENST00000606213 CIRBP-AS1Q8TBR5 109 aa15.16■□□□□ 0.02
PTPRN-219ENST00000606213 CDC42SE2Q9NRR3 84 aa15.16■□□□□ 0.02
PTPRN-219ENST00000606213 LINC00959A0A1B0GUT2 108 aa15.15■□□□□ 0.02
PTPRN-219ENST00000606213 CCL25O15444 150 aa15.15■□□□□ 0.02
PTPRN-219ENST00000606213 IGHV3-64A0A075B6Q5 118 aa15.14■□□□□ 0.01
PTPRN-219ENST00000606213 RPL32P62910 135 aaKnown RBP15.13■□□□□ 0.01
PTPRN-219ENST00000606213 HIGD2BQ4VC39 106 aa15.13■□□□□ 0.01
PTPRN-219ENST00000606213 ORMDL3Q8N138 153 aa15.13■□□□□ 0.01
PTPRN-219ENST00000606213 C15orf56Q8N910 161 aa15.13■□□□□ 0.01
PTPRN-219ENST00000606213 SMIM2Q9BVW6 85 aa15.13■□□□□ 0.01
PTPRN-219ENST00000606213 FOXI1Q12951 378 aa15.12■□□□□ 0.01
PTPRN-219ENST00000606213 DPH3Q96FX2 82 aa15.12■□□□□ 0.01
PTPRN-219ENST00000606213 PHOX2AO14813 284 aa15.11■□□□□ 0.01
PTPRN-219ENST00000606213 NPYP01303 97 aa15.11■□□□□ 0.01
PTPRN-219ENST00000606213 TMEM136Q6ZRR5 245 aa15.11■□□□□ 0.01
PTPRN-219ENST00000606213 UBE2D4Q9Y2X8 147 aa15.11■□□□□ 0.01
PTPRN-219ENST00000606213 CSDC2Q9Y534 153 aaKnown RBP15.11■□□□□ 0.01
PTPRN-219ENST00000606213 DNAH8Q96JB1 4490 aa15.11■□□□□ 0.01
PTPRN-219ENST00000606213 SRRM2Q9UQ35 2752 aaKnown RBP15.1■□□□□ 0.01
PTPRN-219ENST00000606213 UQCC3Q6UW78 93 aa15.1■□□□□ 0.01
PTPRN-219ENST00000606213 SDIM1Q6ZPB5 146 aa15.1■□□□□ 0.01
PTPRN-219ENST00000606213 PRELID3AQ96N28 172 aa15.1■□□□□ 0.01
PTPRN-219ENST00000606213 C1orf196B1AJZ1 125 aa15.09■□□□□ 0.01
PTPRN-219ENST00000606213 RAB5AP20339 215 aa15.09■□□□□ 0.01
PTPRN-219ENST00000606213 CD164L2Q6UWJ8 174 aa15.09■□□□□ 0.01
PTPRN-219ENST00000606213 RNASE13Q5GAN3 156 aaKnown RBP15.08■□□□□ 0
PTPRN-219ENST00000606213 GVQW2A0A096LPI5 108 aaPredicted RBP15.07■□□□□ 0
PTPRN-219ENST00000606213 IGHV1-58A0A0C4DH39 117 aa15.07■□□□□ 0
PTPRN-219ENST00000606213 SLPIP03973 132 aa15.07■□□□□ 0
PTPRN-219ENST00000606213 MALP21145 153 aa15.07■□□□□ 0
PTPRN-219ENST00000606213 TIMM21Q9BVV7 248 aa15.07■□□□□ 0
PTPRN-219ENST00000606213 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.07■□□□□ 0
PTPRN-219ENST00000606213 VPS13BQ7Z7G8 4022 aa15.06■□□□□ 0
PTPRN-219ENST00000606213 TRAV13-1A0A0B4J241 112 aa15.06■□□□□ 0
PTPRN-219ENST00000606213 IFITM2Q01629 132 aa15.06■□□□□ 0
PTPRN-219ENST00000606213 RPL39P62891 51 aaKnown RBP15.05■□□□□ -0
PTPRN-219ENST00000606213 Q6ZUT4 128 aa15.05■□□□□ -0
PTPRN-219ENST00000606213 TMEM218A2RU14 115 aa15.04■□□□□ -0
PTPRN-219ENST00000606213 ZNF561-AS1K7EIQ3 104 aa15.04■□□□□ -0
PTPRN-219ENST00000606213 SPANXA1Q9NS26 97 aa15.04■□□□□ -0
PTPRN-219ENST00000606213 LAMTOR2Q9Y2Q5 125 aa15.04■□□□□ -0
PTPRN-219ENST00000606213 COX7A2LO14548 114 aa15.03■□□□□ -0
PTPRN-219ENST00000606213 MAP1LC3AQ9H492 121 aa15.03■□□□□ -0
PTPRN-219ENST00000606213 LOC389332A0A1B0GUA5 103 aa15.02■□□□□ -0
PTPRN-219ENST00000606213 PANO1I0J062 215 aa15.01□□□□□ -0.01
PTPRN-219ENST00000606213 COX6A2Q02221 97 aa15.01□□□□□ -0.01
PTPRN-219ENST00000606213 IMMP2LQ96T52 175 aa15.01□□□□□ -0.01
PTPRN-219ENST00000606213 CTDSP1Q9GZU7 261 aa15.01□□□□□ -0.01
PTPRN-219ENST00000606213 ADCYAP1P18509 176 aa15□□□□□ -0.01
PTPRN-219ENST00000606213 PKIGQ9Y2B9 76 aa15□□□□□ -0.01
PTPRN-219ENST00000606213 CHTF8P0CG12 524 aa14.99□□□□□ -0.01
PTPRN-219ENST00000606213 IFI27P40305 119 aaPredicted RBP14.99□□□□□ -0.01
PTPRN-219ENST00000606213 COMMD7Q86VX2 200 aa14.99□□□□□ -0.01
PTPRN-219ENST00000606213 LINC00526Q96FQ7 95 aa14.99□□□□□ -0.01
PTPRN-219ENST00000606213 FLG2Q5D862 2391 aaPredicted RBP14.99□□□□□ -0.01
PTPRN-219ENST00000606213 HERC1Q15751 4861 aa14.98□□□□□ -0.01
PTPRN-219ENST00000606213 RPL37AP61513 92 aaKnown RBP14.98□□□□□ -0.01
PTPRN-219ENST00000606213 CARD19Q96LW7 228 aa14.98□□□□□ -0.01
PTPRN-219ENST00000606213 SEC11CQ9BY50 192 aa14.98□□□□□ -0.01
PTPRN-219ENST00000606213 IGKV2-24A0A0C4DH68 120 aa14.97□□□□□ -0.01
PTPRN-219ENST00000606213 APOMO95445 188 aa14.97□□□□□ -0.01
PTPRN-219ENST00000606213 S100PP25815 95 aa14.97□□□□□ -0.01
PTPRN-219ENST00000606213 CIRBPQ14011 172 aaKnown RBP14.97□□□□□ -0.01
PTPRN-219ENST00000606213 IFITM10A6NMD0 228 aa14.96□□□□□ -0.01
PTPRN-219ENST00000606213 MRPS36P82909 103 aaKnown RBP14.96□□□□□ -0.01
PTPRN-219ENST00000606213 C5orf38Q86SI9 138 aa14.96□□□□□ -0.01
PTPRN-219ENST00000606213 PRSS3P2Q8NHM4 247 aa14.96□□□□□ -0.01
PTPRN-219ENST00000606213 SPACA4Q8TDM5 124 aa14.96□□□□□ -0.01
PTPRN-219ENST00000606213 OPRPNQ99935 248 aaPredicted RBP14.96□□□□□ -0.01
PTPRN-219ENST00000606213 A0A087WYN8 130 aa14.95□□□□□ -0.02
PTPRN-219ENST00000606213 PRSS47A8MTI9 375 aa14.95□□□□□ -0.02
PTPRN-219ENST00000606213 SYCNQ0VAF6 134 aa14.95□□□□□ -0.02
PTPRN-219ENST00000606213 MAJINQ3KP22 176 aa14.95□□□□□ -0.02
PTPRN-219ENST00000606213 Q8N8P6 123 aa14.94□□□□□ -0.02
PTPRN-219ENST00000606213 DMBT1Q9UGM3 2413 aaPredicted RBP14.93□□□□□ -0.02
PTPRN-219ENST00000606213 TRAV9-1A0A075B6T8 112 aa14.93□□□□□ -0.02
PTPRN-219ENST00000606213 IGLV4-69A0A075B6H9 119 aa14.92□□□□□ -0.02
PTPRN-219ENST00000606213 J3QL48 77 aa14.92□□□□□ -0.02
PTPRN-219ENST00000606213 ORMDL2Q53FV1 153 aa14.92□□□□□ -0.02
PTPRN-219ENST00000606213 LINC00474Q9P2X8 69 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms