RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 MIXL1Q9H2W2 232 aa2.34□□□□□ -2.03
VRK3-222ENST00000601324 Q9H521 79 aa2.34□□□□□ -2.03
VRK3-222ENST00000601324 TMEM223A0PJW6 202 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 ANKRD20A5PA0PJZ0 165 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 C7orf66A4D0T2 115 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 SSSCA1O60232 199 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 MT-ND6P03923 174 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 AKAIN1P0CW23 69 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 PKIAP61925 76 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 PPP1R1AQ13522 171 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 KRTAP6-3Q3LI67 103 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 KRTAP13-2Q52LG2 175 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 TMEM128Q5BJH2 165 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 C9orf116Q5BN46 136 aaPredicted RBP2.33□□□□□ -2.04
VRK3-222ENST00000601324 ENKURQ8TC29 256 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 SFRP2Q96HF1 295 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 SLIRPQ9GZT3 109 aaKnown RBP2.33□□□□□ -2.04
VRK3-222ENST00000601324 TREM1Q9NP99 234 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 IL36BQ9NZH7 164 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 RSL24D1Q9UHA3 163 aaKnown RBP2.33□□□□□ -2.04
VRK3-222ENST00000601324 MUC12Q9UKN1 5478 aa2.33□□□□□ -2.04
VRK3-222ENST00000601324 TRAV6A0A075B6T7 132 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 PIGBOS1A0A0B4J2F0 54 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 UBE2D1P51668 147 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 VBP1P61758 197 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 NCS1P62166 190 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 RANP62826 216 aaKnown RBP2.32□□□□□ -2.04
VRK3-222ENST00000601324 LGALSLQ3ZCW2 172 aaPredicted RBP2.32□□□□□ -2.04
VRK3-222ENST00000601324 LINC00299Q6ZSB3 139 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 DYNC2LI1Q8TCX1 351 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 C15orf40Q8WUR7 153 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 DEDD2Q8WXF8 326 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 CNBD2Q96M20 576 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 BCL7BQ9BQE9 202 aa2.32□□□□□ -2.04
VRK3-222ENST00000601324 TRBV6-1A0A0K0K1D8 114 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 FAM25AB3EWG3 89 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 FAM25CB3EWG5 89 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 FAM25GB3EWG6 89 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.31□□□□□ -2.04
VRK3-222ENST00000601324 CSN1S1P47710 185 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 RAB5CP51148 216 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 S100A10P60903 97 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 LSM3P62310 102 aaKnown RBP2.31□□□□□ -2.04
VRK3-222ENST00000601324 MRPS10P82664 201 aaKnown RBP2.31□□□□□ -2.04
VRK3-222ENST00000601324 IFITM2Q01629 132 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 MEF2BQ02080 365 aaPredicted RBP2.31□□□□□ -2.04
VRK3-222ENST00000601324 GOLT1AQ6ZVE7 132 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 AKAP14Q86UN6 197 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 OR5C1Q8NGR4 320 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 LINC00526Q96FQ7 95 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 SCGB3A2Q96PL1 93 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 MED28Q9H204 178 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 OTORQ9NRC9 128 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 UQCC1Q9NVA1 299 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 OR5AC2Q9NZP5 309 aa2.31□□□□□ -2.04
VRK3-222ENST00000601324 COLCA2A8K830 154 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 GATCO43716 136 aaKnown RBP2.3□□□□□ -2.04
VRK3-222ENST00000601324 CST7O76096 145 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 GCGP01275 180 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 ARMS2P0C7Q2 107 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 CRIP1P50238 77 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 RAB4BP61018 213 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 RAB2AP61019 212 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 GNG5P63218 68 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 ZNF726P1Q15940 193 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 ORMDL2Q53FV1 153 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 TMEM97Q5BJF2 176 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 FAM74A4Q5TZK3 123 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 KRTAP5-5Q701N2 237 aaPredicted RBP2.3□□□□□ -2.04
VRK3-222ENST00000601324 CARD19Q96LW7 228 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 AQP10Q96PS8 301 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 CAMK2N2Q96S95 79 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 ZNF471Q9BX82 626 aaPredicted RBP2.3□□□□□ -2.04
VRK3-222ENST00000601324 NPCDR1Q9BY65 106 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 SCP2D1Q9UJQ7 156 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 OBSCNQ5VST9 7968 aa2.3□□□□□ -2.04
VRK3-222ENST00000601324 TRBV25-1A0A075B6N4 114 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 A0A087WXM4 84 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 UBE2L5PA0A1B0GUS4 154 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 IGSF23A1L1A6 192 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 C9orf170A2RU37 121 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 CENPXA8MT69 81 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 KRBOX1C9JBD0 128 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 H3BVH4 76 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 BCL2P10415 239 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 FGF7P21781 194 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 IL15RAQ13261 267 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 NEDD8Q15843 81 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 COX19Q49B96 90 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 SPANXN2Q5MJ10 180 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 IGFL1Q6UW32 110 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 STX12Q86Y82 276 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 NUP35Q8NFH5 326 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 S100ZQ8WXG8 99 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 DERL1Q9BUN8 251 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 WFDC1Q9HC57 220 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 LYRM2Q9NU23 88 aaPredicted RBP2.29□□□□□ -2.04
VRK3-222ENST00000601324 PKIGQ9Y2B9 76 aa2.29□□□□□ -2.04
VRK3-222ENST00000601324 IGHV1-24A0A0C4DH33 117 aa2.28□□□□□ -2.04
VRK3-222ENST00000601324 LOC107984640A0A0U1RRK4 108 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms