RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PPP1R2P9O14990 202 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 PNRC1Q12796 327 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-205ENST00000595028 MRPL52Q86TS9 123 aaKnown RBP9.77□□□□□ -0.85
TRIM28-205ENST00000595028 OR5A1Q8NGJ0 315 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 CHCHD10Q8WYQ3 142 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-205ENST00000595028 TMEM101Q96IK0 257 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 CHAC1Q9BUX1 264 aa9.77□□□□□ -0.85
TRIM28-205ENST00000595028 FCER1GP30273 86 aa9.76□□□□□ -0.85
TRIM28-205ENST00000595028 CKS2P33552 79 aa9.76□□□□□ -0.85
TRIM28-205ENST00000595028 CNBPP62633 177 aaKnown RBP9.76□□□□□ -0.85
TRIM28-205ENST00000595028 UQCC3Q6UW78 93 aa9.76□□□□□ -0.85
TRIM28-205ENST00000595028 C9orf163Q8N9P6 203 aa9.76□□□□□ -0.85
TRIM28-205ENST00000595028 KIR2DL4Q99706 377 aa9.76□□□□□ -0.85
TRIM28-205ENST00000595028 TRBV24-1A0A075B6N3 115 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 F8W036 122 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 ATP5L2Q7Z4Y8 100 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 LINC00528Q8N1L1 170 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 C15orf56Q8N910 161 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 C20orf78Q9BR46 151 aa9.75□□□□□ -0.85
TRIM28-205ENST00000595028 D6R8Y8 96 aa9.74□□□□□ -0.85
TRIM28-205ENST00000595028 RPL32P62910 135 aaKnown RBP9.74□□□□□ -0.85
TRIM28-205ENST00000595028 CIRBP-AS1Q8TBR5 109 aa9.74□□□□□ -0.85
TRIM28-205ENST00000595028 AP5S1Q9NUS5 200 aa9.74□□□□□ -0.85
TRIM28-205ENST00000595028 TNFRSF6BO95407 300 aa9.73□□□□□ -0.85
TRIM28-205ENST00000595028 FOXI1Q12951 378 aa9.73□□□□□ -0.85
TRIM28-205ENST00000595028 ANAPC16Q96DE5 110 aa9.73□□□□□ -0.85
TRIM28-205ENST00000595028 SMIM2Q9BVW6 85 aa9.73□□□□□ -0.85
TRIM28-205ENST00000595028 CDC42SE2Q9NRR3 84 aa9.73□□□□□ -0.85
TRIM28-205ENST00000595028 LINC00959A0A1B0GUT2 108 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 NPYP01303 97 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 PPBPP02775 128 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 MT-ND4LP03901 98 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 XCL1P47992 114 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 SMAGPQ0VAQ4 97 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 CFAP161Q6P656 301 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 ZNF664Q8N3J9 261 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 UBE2D4Q9Y2X8 147 aa9.72□□□□□ -0.85
TRIM28-205ENST00000595028 GVQW2A0A096LPI5 108 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-205ENST00000595028 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.71□□□□□ -0.86
TRIM28-205ENST00000595028 PHOX2AO14813 284 aa9.71□□□□□ -0.86
TRIM28-205ENST00000595028 CCL25O15444 150 aa9.71□□□□□ -0.86
TRIM28-205ENST00000595028 SLPIP03973 132 aa9.71□□□□□ -0.86
TRIM28-205ENST00000595028 PLA2G1BP04054 148 aaKnown RBP9.71□□□□□ -0.86
TRIM28-205ENST00000595028 CSDC2Q9Y534 153 aaKnown RBP9.71□□□□□ -0.86
TRIM28-205ENST00000595028 TCAPO15273 167 aa9.7□□□□□ -0.86
TRIM28-205ENST00000595028 HIGD2BQ4VC39 106 aa9.7□□□□□ -0.86
TRIM28-205ENST00000595028 SDIM1Q6ZPB5 146 aa9.7□□□□□ -0.86
TRIM28-205ENST00000595028 ORMDL3Q8N138 153 aa9.7□□□□□ -0.86
TRIM28-205ENST00000595028 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.7□□□□□ -0.86
TRIM28-205ENST00000595028 IGHV3-64A0A075B6Q5 118 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 ADCYAP1P18509 176 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 SS18Q15532 418 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 NDUFA5Q16718 116 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 SERTAD4-AS1Q5TG53 156 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 TMEM18Q96B42 140 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 TIMM21Q9BVV7 248 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 RNF213Q63HN8 5207 aa9.69□□□□□ -0.86
TRIM28-205ENST00000595028 TMEM218A2RU14 115 aa9.68□□□□□ -0.86
TRIM28-205ENST00000595028 PANO1I0J062 215 aa9.68□□□□□ -0.86
TRIM28-205ENST00000595028 CD164L2Q6UWJ8 174 aa9.68□□□□□ -0.86
TRIM28-205ENST00000595028 Q6ZUT4 128 aa9.68□□□□□ -0.86
TRIM28-205ENST00000595028 PRELID3AQ96N28 172 aa9.68□□□□□ -0.86
TRIM28-205ENST00000595028 LRP1Q07954 4544 aaKnown RBP9.68□□□□□ -0.86
TRIM28-205ENST00000595028 PKHD1L1Q86WI1 4243 aa9.67□□□□□ -0.86
TRIM28-205ENST00000595028 CIRBPQ14011 172 aaKnown RBP9.67□□□□□ -0.86
TRIM28-205ENST00000595028 RNASE13Q5GAN3 156 aaKnown RBP9.67□□□□□ -0.86
TRIM28-205ENST00000595028 TMEM136Q6ZRR5 245 aa9.67□□□□□ -0.86
TRIM28-205ENST00000595028 IGHV1-58A0A0C4DH39 117 aa9.66□□□□□ -0.86
TRIM28-205ENST00000595028 RPL39P62891 51 aaKnown RBP9.66□□□□□ -0.86
TRIM28-205ENST00000595028 KRTAP29-1A8MX34 341 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-205ENST00000595028 C1orf196B1AJZ1 125 aa9.65□□□□□ -0.86
TRIM28-205ENST00000595028 SLC7A5P1Q8MH63 180 aa9.65□□□□□ -0.86
TRIM28-205ENST00000595028 SEC11CQ9BY50 192 aa9.65□□□□□ -0.86
TRIM28-205ENST00000595028 SPANXA1Q9NS26 97 aa9.65□□□□□ -0.86
TRIM28-205ENST00000595028 LAMTOR2Q9Y2Q5 125 aa9.65□□□□□ -0.86
TRIM28-205ENST00000595028 TRAV13-1A0A0B4J241 112 aa9.64□□□□□ -0.87
TRIM28-205ENST00000595028 CHTF8P0CG12 524 aa9.64□□□□□ -0.87
TRIM28-205ENST00000595028 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-205ENST00000595028 IMMP2LQ96T52 175 aa9.64□□□□□ -0.87
TRIM28-205ENST00000595028 SPACA4Q8TDM5 124 aa9.63□□□□□ -0.87
TRIM28-205ENST00000595028 FAM104AQ969W3 186 aa9.63□□□□□ -0.87
TRIM28-205ENST00000595028 MAP1LC3AQ9H492 121 aa9.63□□□□□ -0.87
TRIM28-205ENST00000595028 PRSS47A8MTI9 375 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 COX7A2LO14548 114 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 RAB5AP20339 215 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 MRPS36P82909 103 aaKnown RBP9.62□□□□□ -0.87
TRIM28-205ENST00000595028 CTDSP1Q9GZU7 261 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 PLA2G2DQ9UNK4 145 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 FAT3Q8TDW7 4589 aa9.62□□□□□ -0.87
TRIM28-205ENST00000595028 MALP21145 153 aa9.61□□□□□ -0.87
TRIM28-205ENST00000595028 COX6A2Q02221 97 aa9.61□□□□□ -0.87
TRIM28-205ENST00000595028 LINC00526Q96FQ7 95 aa9.61□□□□□ -0.87
TRIM28-205ENST00000595028 CARD19Q96LW7 228 aa9.61□□□□□ -0.87
TRIM28-205ENST00000595028 LOC389332A0A1B0GUA5 103 aa9.6□□□□□ -0.87
TRIM28-205ENST00000595028 ZNF561-AS1K7EIQ3 104 aa9.6□□□□□ -0.87
TRIM28-205ENST00000595028 IFI27P40305 119 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-205ENST00000595028 RPL37AP61513 92 aaKnown RBP9.6□□□□□ -0.87
TRIM28-205ENST00000595028 PRSS3P2Q8NHM4 247 aa9.6□□□□□ -0.87
TRIM28-205ENST00000595028 OPRPNQ99935 248 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-205ENST00000595028 CARHSP1Q9Y2V2 147 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms