RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 OR5A1Q8NGJ0 315 aa9.55□□□□□ -0.88
VRK3-206ENST00000594090 HSPG2P98160 4391 aa9.54□□□□□ -0.88
VRK3-206ENST00000594090 TCAPO15273 167 aa9.54□□□□□ -0.88
VRK3-206ENST00000594090 S100PP25815 95 aa9.54□□□□□ -0.88
VRK3-206ENST00000594090 LAMTOR2Q9Y2Q5 125 aa9.54□□□□□ -0.88
VRK3-206ENST00000594090 UBE2D4Q9Y2X8 147 aa9.53□□□□□ -0.88
VRK3-206ENST00000594090 SMAGPQ0VAQ4 97 aa9.52□□□□□ -0.89
VRK3-206ENST00000594090 RPS10P5Q9NQ39 176 aa9.52□□□□□ -0.89
VRK3-206ENST00000594090 CDC42SE2Q9NRR3 84 aa9.52□□□□□ -0.89
VRK3-206ENST00000594090 CSDC2Q9Y534 153 aaKnown RBP9.52□□□□□ -0.89
VRK3-206ENST00000594090 GAGE12HA6NDE8 117 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 PRSS47A8MTI9 375 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 DGAT2L7PQ6IED9 249 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 ZNF664Q8N3J9 261 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 CHCHD10Q8WYQ3 142 aaPredicted RBP9.51□□□□□ -0.89
VRK3-206ENST00000594090 TMEM18Q96B42 140 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 MAP1LC3AQ9H492 121 aa9.51□□□□□ -0.89
VRK3-206ENST00000594090 PRSS1P07477 247 aa9.5□□□□□ -0.89
VRK3-206ENST00000594090 RYR1P21817 5038 aa9.5□□□□□ -0.89
VRK3-206ENST00000594090 LOC389332A0A1B0GUA5 103 aa9.49□□□□□ -0.89
VRK3-206ENST00000594090 LINC00959A0A1B0GUT2 108 aa9.49□□□□□ -0.89
VRK3-206ENST00000594090 APOC3P02656 99 aa9.49□□□□□ -0.89
VRK3-206ENST00000594090 XGP55808 180 aa9.49□□□□□ -0.89
VRK3-206ENST00000594090 RPL39P62891 51 aaKnown RBP9.49□□□□□ -0.89
VRK3-206ENST00000594090 TIMM21Q9BVV7 248 aa9.49□□□□□ -0.89
VRK3-206ENST00000594090 RAB5AP20339 215 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 NDUFA5Q16718 116 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 LINC01620Q4KN68 170 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 Q6ZUT4 128 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 CCL25O15444 150 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 SNAPINO95295 136 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 RNASE13Q5GAN3 156 aaKnown RBP9.48□□□□□ -0.89
VRK3-206ENST00000594090 SVBPQ8N300 66 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 GNB1LQ9BYB4 327 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 KRTAP17-1Q9BYP8 105 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 SPANXA1Q9NS26 97 aa9.48□□□□□ -0.89
VRK3-206ENST00000594090 XCL1P47992 114 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 FOXI1Q12951 378 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 SS18Q15532 418 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 Q8N8P6 123 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 C15orf56Q8N910 161 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 FAM30AQ9NZY2 134 aa9.47□□□□□ -0.89
VRK3-206ENST00000594090 hDV102S1A0JD36 115 aa9.46□□□□□ -0.9
VRK3-206ENST00000594090 COX19Q49B96 90 aa9.46□□□□□ -0.9
VRK3-206ENST00000594090 Q6ZSA8 131 aa9.46□□□□□ -0.9
VRK3-206ENST00000594090 HAMPP81172 84 aa9.45□□□□□ -0.9
VRK3-206ENST00000594090 CFAP161Q6P656 301 aa9.45□□□□□ -0.9
VRK3-206ENST00000594090 FAM104AQ969W3 186 aa9.45□□□□□ -0.9
VRK3-206ENST00000594090 MT-ND6P03923 174 aa9.44□□□□□ -0.9
VRK3-206ENST00000594090 CNBPP62633 177 aaKnown RBP9.44□□□□□ -0.9
VRK3-206ENST00000594090 MRPS36P82909 103 aaKnown RBP9.44□□□□□ -0.9
VRK3-206ENST00000594090 CD164L2Q6UWJ8 174 aa9.44□□□□□ -0.9
VRK3-206ENST00000594090 Q8N1X5 172 aa9.44□□□□□ -0.9
VRK3-206ENST00000594090 NXT2Q9NPJ8 142 aaKnown RBP9.44□□□□□ -0.9
VRK3-206ENST00000594090 TRAV13-1A0A0B4J241 112 aa9.43□□□□□ -0.9
VRK3-206ENST00000594090 C1orf196B1AJZ1 125 aa9.43□□□□□ -0.9
VRK3-206ENST00000594090 K7EMI3 77 aa9.43□□□□□ -0.9
VRK3-206ENST00000594090 IFI27P40305 119 aaPredicted RBP9.43□□□□□ -0.9
VRK3-206ENST00000594090 ORMDL2Q53FV1 153 aa9.43□□□□□ -0.9
VRK3-206ENST00000594090 OPRPNQ99935 248 aaPredicted RBP9.43□□□□□ -0.9
VRK3-206ENST00000594090 MRPL18Q9H0U6 180 aaKnown RBP9.43□□□□□ -0.9
VRK3-206ENST00000594090 AP5S1Q9NUS5 200 aa9.43□□□□□ -0.9
VRK3-206ENST00000594090 TGIF2-C20orf24A0A0A6YYL0 155 aa9.42□□□□□ -0.9
VRK3-206ENST00000594090 HIGD2BQ4VC39 106 aa9.42□□□□□ -0.9
VRK3-206ENST00000594090 C9orf163Q8N9P6 203 aa9.42□□□□□ -0.9
VRK3-206ENST00000594090 KRTAP4-5Q9BYR2 181 aa9.42□□□□□ -0.9
VRK3-206ENST00000594090 PYGO1Q9Y3Y4 419 aa9.42□□□□□ -0.9
VRK3-206ENST00000594090 GVQW2A0A096LPI5 108 aaPredicted RBP9.41□□□□□ -0.9
VRK3-206ENST00000594090 SLPIP03973 132 aa9.41□□□□□ -0.9
VRK3-206ENST00000594090 C2orf66Q6UXQ4 117 aa9.41□□□□□ -0.9
VRK3-206ENST00000594090 ALKBH7Q9BT30 221 aaPredicted RBP9.41□□□□□ -0.9
VRK3-206ENST00000594090 CYSLTR1Q9Y271 337 aa9.41□□□□□ -0.9
VRK3-206ENST00000594090 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
VRK3-206ENST00000594090 IGHV1-58A0A0C4DH39 117 aa9.4□□□□□ -0.9
VRK3-206ENST00000594090 FABP9Q0Z7S8 132 aa9.4□□□□□ -0.9
VRK3-206ENST00000594090 DNAH8Q96JB1 4490 aa9.4□□□□□ -0.9
VRK3-206ENST00000594090 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.39□□□□□ -0.91
VRK3-206ENST00000594090 IFITM10A6NMD0 228 aa9.39□□□□□ -0.91
VRK3-206ENST00000594090 SLC7A5P1Q8MH63 180 aa9.39□□□□□ -0.91
VRK3-206ENST00000594090 COX7A2LO14548 114 aa9.39□□□□□ -0.91
VRK3-206ENST00000594090 PRSS3P2Q8NHM4 247 aa9.39□□□□□ -0.91
VRK3-206ENST00000594090 TMEM141Q96I45 108 aa9.39□□□□□ -0.91
VRK3-206ENST00000594090 SMR3BP02814 79 aaPredicted RBP9.38□□□□□ -0.91
VRK3-206ENST00000594090 SCXQ7RTU7 201 aa9.38□□□□□ -0.91
VRK3-206ENST00000594090 YPEL4Q96NS1 127 aa9.38□□□□□ -0.91
VRK3-206ENST00000594090 TRAPPC1Q9Y5R8 145 aa9.38□□□□□ -0.91
VRK3-206ENST00000594090 IGIPA6NJ69 53 aa9.37□□□□□ -0.91
VRK3-206ENST00000594090 MALP21145 153 aa9.37□□□□□ -0.91
VRK3-206ENST00000594090 CHAC1Q9BUX1 264 aa9.37□□□□□ -0.91
VRK3-206ENST00000594090 IGHV3-64A0A075B6Q5 118 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 LINC01546A6NGU7 62 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 EPM2AB3EWF7 344 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 NPSP0C0P6 89 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 G0S2P27469 103 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 Q6ZN92 141 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 TEX43Q6ZNM6 134 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 SDIM1Q6ZPB5 146 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 C5orf38Q86SI9 138 aa9.36□□□□□ -0.91
VRK3-206ENST00000594090 TOMM6Q96B49 74 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms