RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 PKIGQ9Y2B9 76 aa7.12□□□□□ -1.27
LIG3-214ENST00000592244 SRRM2Q9UQ35 2752 aaKnown RBP7.12□□□□□ -1.27
LIG3-214ENST00000592244 C9JQL5 133 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 ESDP10768 282 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 CKS2P33552 79 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 CAMPP49913 170 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 HBBP68871 147 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 FAM104BQ5XKR9 115 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 MRPL52Q86TS9 123 aaKnown RBP7.11□□□□□ -1.27
LIG3-214ENST00000592244 C20orf78Q9BR46 151 aa7.11□□□□□ -1.27
LIG3-214ENST00000592244 CCL25O15444 150 aa7.1□□□□□ -1.27
LIG3-214ENST00000592244 PPBPP02775 128 aa7.1□□□□□ -1.27
LIG3-214ENST00000592244 RPS10P46783 165 aaKnown RBP7.1□□□□□ -1.27
LIG3-214ENST00000592244 SRSF3P84103 164 aaKnown RBP7.1□□□□□ -1.27
LIG3-214ENST00000592244 PNRC1Q12796 327 aaPredicted RBP7.1□□□□□ -1.27
LIG3-214ENST00000592244 SMKR1H3BMG3 65 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 XCL1P47992 114 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 MRPL51Q4U2R6 128 aaKnown RBP7.09□□□□□ -1.27
LIG3-214ENST00000592244 SDIM1Q6ZPB5 146 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 ATP5L2Q7Z4Y8 100 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 ZNF664Q8N3J9 261 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 CDC42SE2Q9NRR3 84 aa7.09□□□□□ -1.27
LIG3-214ENST00000592244 CSDC2Q9Y534 153 aaKnown RBP7.09□□□□□ -1.27
LIG3-214ENST00000592244 TRBV24-1A0A075B6N3 115 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 IGHV1-58A0A0C4DH39 117 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 LINC00959A0A1B0GUT2 108 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 C1orf196B1AJZ1 125 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 J3QL48 77 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 PHOX2AO14813 284 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 GAS8-AS1O95177 125 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 MT-ND4LP03901 98 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 RPL32P62910 135 aaKnown RBP7.08□□□□□ -1.28
LIG3-214ENST00000592244 MRPL54Q6P161 138 aaKnown RBP7.08□□□□□ -1.28
LIG3-214ENST00000592244 NRACQ8N912 160 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 DMBT1Q9UGM3 2413 aaPredicted RBP7.08□□□□□ -1.28
LIG3-214ENST00000592244 FAT1Q14517 4588 aa7.08□□□□□ -1.28
LIG3-214ENST00000592244 GVQW2A0A096LPI5 108 aaPredicted RBP7.07□□□□□ -1.28
LIG3-214ENST00000592244 FOXI1Q12951 378 aa7.07□□□□□ -1.28
LIG3-214ENST00000592244 HIGD2BQ4VC39 106 aa7.07□□□□□ -1.28
LIG3-214ENST00000592244 CD164L2Q6UWJ8 174 aa7.07□□□□□ -1.28
LIG3-214ENST00000592244 C15orf56Q8N910 161 aa7.07□□□□□ -1.28
LIG3-214ENST00000592244 ZNF561-AS1K7EIQ3 104 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 TNFRSF6BO95407 300 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 RAB5AP20339 215 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 MALP21145 153 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 RPL37AP61513 92 aaKnown RBP7.06□□□□□ -1.28
LIG3-214ENST00000592244 ORMDL3Q8N138 153 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 TIMM21Q9BVV7 248 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 LINC00474Q9P2X8 69 aa7.06□□□□□ -1.28
LIG3-214ENST00000592244 A0A1B0GXF2 115 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 D6R8Y8 96 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 CIRBPQ14011 172 aaKnown RBP7.05□□□□□ -1.28
LIG3-214ENST00000592244 SMIM2Q9BVW6 85 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 KRTAP3-3Q9BYR6 98 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 UBE2D4Q9Y2X8 147 aa7.05□□□□□ -1.28
LIG3-214ENST00000592244 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.05□□□□□ -1.28
LIG3-214ENST00000592244 VPS13BQ7Z7G8 4022 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 COX7A2LO14548 114 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 APOMO95445 188 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 TMEM136Q6ZRR5 245 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 C7orf33Q8WU49 177 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 SPANXA1Q9NS26 97 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 LAMTOR2Q9Y2Q5 125 aa7.04□□□□□ -1.28
LIG3-214ENST00000592244 FLG2Q5D862 2391 aaPredicted RBP7.04□□□□□ -1.28
LIG3-214ENST00000592244 TRAV13-1A0A0B4J241 112 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 SLPIP03973 132 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 COX6A2Q02221 97 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 CLLU1Q5K131 121 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 SPACA4Q8TDM5 124 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 CARD19Q96LW7 228 aa7.03□□□□□ -1.28
LIG3-214ENST00000592244 DNAH8Q96JB1 4490 aa7.02□□□□□ -1.29
LIG3-214ENST00000592244 KRTAP29-1A8MX34 341 aaPredicted RBP7.02□□□□□ -1.29
LIG3-214ENST00000592244 PRELID3AQ96N28 172 aa7.02□□□□□ -1.29
LIG3-214ENST00000592244 A0A087WYN8 130 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 NPYP01303 97 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 IFI27P40305 119 aaPredicted RBP7.01□□□□□ -1.29
LIG3-214ENST00000592244 SYCNQ0VAF6 134 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 MAJINQ3KP22 176 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 UQCC3Q6UW78 93 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 Q6ZUT4 128 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 MAP1LC3AQ9H492 121 aa7.01□□□□□ -1.29
LIG3-214ENST00000592244 IGKV2-24A0A0C4DH68 120 aa7□□□□□ -1.29
LIG3-214ENST00000592244 PANO1I0J062 215 aa7□□□□□ -1.29
LIG3-214ENST00000592244 OXTP01178 125 aa7□□□□□ -1.29
LIG3-214ENST00000592244 G0S2P27469 103 aa7□□□□□ -1.29
LIG3-214ENST00000592244 MRPS36P82909 103 aaKnown RBP7□□□□□ -1.29
LIG3-214ENST00000592244 IMMP2LQ96T52 175 aa7□□□□□ -1.29
LIG3-214ENST00000592244 PLAC8Q9NZF1 115 aa7□□□□□ -1.29
LIG3-214ENST00000592244 IGLV4-69A0A075B6H9 119 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 IFITM10A6NMD0 228 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 K7EMI3 77 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 CHTF8P0CG12 524 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 RPL39P62891 51 aaKnown RBP6.99□□□□□ -1.29
LIG3-214ENST00000592244 RNASE13Q5GAN3 156 aaKnown RBP6.99□□□□□ -1.29
LIG3-214ENST00000592244 PRSS3P2Q8NHM4 247 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 CAMK2N2Q96S95 79 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 CTDSP1Q9GZU7 261 aa6.99□□□□□ -1.29
LIG3-214ENST00000592244 F8WDY8 70 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 Q6ZN92 141 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms