RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TMEM97Q5BJF2 176 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 LINC00612Q8N6U2 182 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 C20orf203Q8NBC4 194 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 PMCHL2Q9BQD1 86 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 KRTAP4-5Q9BYR2 181 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 HHLA3Q9XRX5 114 aa7.14□□□□□ -1.27
SS18-210ENST00000578700 A0A087WX48 190 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 IGKCP01834 107 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 NPSP0C0P6 89 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 DDTP30046 118 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 FHL2Q14192 279 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 ODF1Q14990 250 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 DEFB104AQ8WTQ1 72 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 DKK2Q9UBU2 259 aa7.13□□□□□ -1.27
SS18-210ENST00000578700 CHTOPQ9Y3Y2 248 aaKnown RBP7.13□□□□□ -1.27
SS18-210ENST00000578700 ATP5G1P05496 136 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 PMVKQ15126 192 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 DGAT2L7PQ6IED9 249 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 Q6ZTC4 211 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 Q8NAQ8 132 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 BAALCQ8WXS3 180 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 SPANXA1Q9NS26 97 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 UQCR10Q9UDW1 63 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 PRO0255Q9UI72 69 aa7.12□□□□□ -1.27
SS18-210ENST00000578700 TRAV10A0A0B4J240 114 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 IGHV3-38A0A0C4DH36 116 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 IGIPA6NJ69 53 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 F8VRH5 84 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 UBE2L6O14933 153 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 RTL8CO15255 209 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 CRYBA4P53673 196 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 UBE2D3P61077 147 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 UBE2D2P62837 147 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 RPL39P62891 51 aaKnown RBP7.11□□□□□ -1.27
SS18-210ENST00000578700 MIEN1Q9BRT3 115 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 GTSF1LQ9H1H1 148 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 VCX2Q9H322 139 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 PYGO1Q9Y3Y4 419 aa7.11□□□□□ -1.27
SS18-210ENST00000578700 hDV102S1A0JD36 115 aa7.1□□□□□ -1.27
SS18-210ENST00000578700 PAX4O43316 350 aa7.1□□□□□ -1.27
SS18-210ENST00000578700 TMEM101Q96IK0 257 aa7.1□□□□□ -1.27
SS18-210ENST00000578700 MRPL35Q9NZE8 188 aaKnown RBP7.1□□□□□ -1.27
SS18-210ENST00000578700 LRP1BQ9NZR2 4599 aa7.1□□□□□ -1.27
SS18-210ENST00000578700 TRBV25-1A0A075B6N4 114 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 DEFB131BA0A096LNP1 70 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 H7C423 109 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 GYPEP15421 78 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 MAJINQ3KP22 176 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 AMMECR1LQ6DCA0 310 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 SLC25A34Q6PIV7 304 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 C2orf88Q9BSF0 95 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 TMEM243Q9BU79 118 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 TIMM21Q9BVV7 248 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 CST9LQ9H4G1 147 aa7.09□□□□□ -1.27
SS18-210ENST00000578700 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.08□□□□□ -1.28
SS18-210ENST00000578700 IGKV2-29A2NJV5 120 aaPredicted RBP7.08□□□□□ -1.28
SS18-210ENST00000578700 F5H768 121 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 IGLC3P0DOY3 106 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 HNRNPA3P51991 378 aaKnown RBP7.08□□□□□ -1.28
SS18-210ENST00000578700 HERVK_113P61574 105 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 SH2D6Q7Z4S9 175 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 UBE2DNLQ8IWF7 75 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 ATP6V0E2Q8NHE4 81 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 CHCHD7Q9BUK0 85 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 Q9UF83 564 aa7.08□□□□□ -1.28
SS18-210ENST00000578700 HERC1Q15751 4861 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 HTN3P15516 51 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 STPG4Q8N801 248 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 OR5A1Q8NGJ0 315 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 C14orf144Q96I85 54 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 CELA1Q9UNI1 258 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 UBE2D4Q9Y2X8 147 aa7.07□□□□□ -1.28
SS18-210ENST00000578700 IGLV4-3A0A075B6K6 122 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 TRBV6-8A0A0A6YYG3 113 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 LOC100131303A0A0U1RQF7 123 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 LINC00587B1AMM8 73 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 NMUP48645 174 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 MRPS36P82909 103 aaKnown RBP7.06□□□□□ -1.28
SS18-210ENST00000578700 C12orf74Q32Q52 190 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 ZC2HC1BQ5TFG8 222 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 CHCHD5Q9BSY4 110 aa7.06□□□□□ -1.28
SS18-210ENST00000578700 APOBP04114 4563 aaKnown RBP7.06□□□□□ -1.28
SS18-210ENST00000578700 TRAV26-1A0A087WT03 109 aa7.05□□□□□ -1.28
SS18-210ENST00000578700 FGF6P10767 208 aa7.05□□□□□ -1.28
SS18-210ENST00000578700 ZNF25P17030 456 aaPredicted RBP7.05□□□□□ -1.28
SS18-210ENST00000578700 MRPL23Q16540 153 aaKnown RBP7.05□□□□□ -1.28
SS18-210ENST00000578700 MRPL52Q86TS9 123 aaKnown RBP7.05□□□□□ -1.28
SS18-210ENST00000578700 CSDC2Q9Y534 153 aaKnown RBP7.05□□□□□ -1.28
SS18-210ENST00000578700 ICOSQ9Y6W8 199 aa7.05□□□□□ -1.28
SS18-210ENST00000578700 A0A0J9YY99 117 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 J3QL48 77 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 LINC00694P0DN24 101 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 COX8AP10176 69 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 SMCPP49901 116 aaPredicted RBP7.04□□□□□ -1.28
SS18-210ENST00000578700 SEC11AP67812 179 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 ANKRD39Q53RE8 183 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 TMEM170BQ5T4T1 132 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 NTM-AS1Q6ZSK4 140 aa7.04□□□□□ -1.28
SS18-210ENST00000578700 OPRPNQ99935 248 aaPredicted RBP7.04□□□□□ -1.28
SS18-210ENST00000578700 CHAC1Q9BUX1 264 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms