RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 HSPG2P98160 4391 aa12.63□□□□□ -0.39
SS18-208ENST00000577751 PRSS47A8MTI9 375 aa12.63□□□□□ -0.39
SS18-208ENST00000577751 KRTAP17-1Q9BYP8 105 aa12.63□□□□□ -0.39
SS18-208ENST00000577751 CDC42SE2Q9NRR3 84 aa12.63□□□□□ -0.39
SS18-208ENST00000577751 LAMTOR2Q9Y2Q5 125 aa12.63□□□□□ -0.39
SS18-208ENST00000577751 CSDC2Q9Y534 153 aaKnown RBP12.63□□□□□ -0.39
SS18-208ENST00000577751 XGP55808 180 aa12.62□□□□□ -0.39
SS18-208ENST00000577751 CLRN3Q8NCR9 226 aa12.62□□□□□ -0.39
SS18-208ENST00000577751 UBE2D4Q9Y2X8 147 aa12.62□□□□□ -0.39
SS18-208ENST00000577751 IGKV3OR2-268A0A0C4DH90 116 aa12.61□□□□□ -0.39
SS18-208ENST00000577751 RHEBQ15382 184 aa12.61□□□□□ -0.39
SS18-208ENST00000577751 ZNF664Q8N3J9 261 aa12.6□□□□□ -0.39
SS18-208ENST00000577751 TIMM21Q9BVV7 248 aa12.6□□□□□ -0.39
SS18-208ENST00000577751 LINC00959A0A1B0GUT2 108 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 PRSS1P07477 247 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 S100PP25815 95 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 SMAGPQ0VAQ4 97 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 DGAT2L7PQ6IED9 249 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 CHCHD10Q8WYQ3 142 aaPredicted RBP12.59□□□□□ -0.39
SS18-208ENST00000577751 TMEM18Q96B42 140 aa12.59□□□□□ -0.39
SS18-208ENST00000577751 GAGE12HA6NDE8 117 aa12.58□□□□□ -0.4
SS18-208ENST00000577751 MAP1LC3AQ9H492 121 aa12.57□□□□□ -0.4
SS18-208ENST00000577751 RPS10P5Q9NQ39 176 aa12.57□□□□□ -0.4
SS18-208ENST00000577751 FAM30AQ9NZY2 134 aa12.57□□□□□ -0.4
SS18-208ENST00000577751 RPL39P62891 51 aaKnown RBP12.56□□□□□ -0.4
SS18-208ENST00000577751 LINC01620Q4KN68 170 aa12.56□□□□□ -0.4
SS18-208ENST00000577751 Q6ZSA8 131 aa12.56□□□□□ -0.4
SS18-208ENST00000577751 GNB1LQ9BYB4 327 aa12.56□□□□□ -0.4
SS18-208ENST00000577751 LOC389332A0A1B0GUA5 103 aa12.55□□□□□ -0.4
SS18-208ENST00000577751 RAB5AP20339 215 aa12.55□□□□□ -0.4
SS18-208ENST00000577751 FOXI1Q12951 378 aa12.55□□□□□ -0.4
SS18-208ENST00000577751 Q8N1X5 172 aa12.55□□□□□ -0.4
SS18-208ENST00000577751 FAM104AQ969W3 186 aa12.55□□□□□ -0.4
SS18-208ENST00000577751 CCL25O15444 150 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 APOC3P02656 99 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 SS18Q15532 418 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 Q8N8P6 123 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 C15orf56Q8N910 161 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 KRTAP4-5Q9BYR2 181 aa12.54□□□□□ -0.4
SS18-208ENST00000577751 KIAA1644Q3SXP7 199 aa12.53□□□□□ -0.4
SS18-208ENST00000577751 COX19Q49B96 90 aa12.53□□□□□ -0.4
SS18-208ENST00000577751 Q6ZUT4 128 aa12.53□□□□□ -0.4
SS18-208ENST00000577751 SPANXA1Q9NS26 97 aa12.53□□□□□ -0.4
SS18-208ENST00000577751 XCL1P47992 114 aa12.52□□□□□ -0.41
SS18-208ENST00000577751 RNASE13Q5GAN3 156 aaKnown RBP12.52□□□□□ -0.41
SS18-208ENST00000577751 CFAP161Q6P656 301 aa12.52□□□□□ -0.41
SS18-208ENST00000577751 SVBPQ8N300 66 aa12.52□□□□□ -0.41
SS18-208ENST00000577751 C9orf163Q8N9P6 203 aa12.52□□□□□ -0.41
SS18-208ENST00000577751 hDV102S1A0JD36 115 aa12.51□□□□□ -0.41
SS18-208ENST00000577751 K7EMI3 77 aa12.51□□□□□ -0.41
SS18-208ENST00000577751 SNAPINO95295 136 aa12.51□□□□□ -0.41
SS18-208ENST00000577751 CNBPP62633 177 aaKnown RBP12.51□□□□□ -0.41
SS18-208ENST00000577751 MRPS36P82909 103 aaKnown RBP12.51□□□□□ -0.41
SS18-208ENST00000577751 NDUFA5Q16718 116 aa12.51□□□□□ -0.41
SS18-208ENST00000577751 CD164L2Q6UWJ8 174 aa12.51□□□□□ -0.41
SS18-208ENST00000577751 C1orf196B1AJZ1 125 aa12.5□□□□□ -0.41
SS18-208ENST00000577751 SLPIP03973 132 aa12.5□□□□□ -0.41
SS18-208ENST00000577751 NXT2Q9NPJ8 142 aaKnown RBP12.5□□□□□ -0.41
SS18-208ENST00000577751 PYGO1Q9Y3Y4 419 aa12.5□□□□□ -0.41
SS18-208ENST00000577751 DNAH8Q96JB1 4490 aa12.5□□□□□ -0.41
SS18-208ENST00000577751 MT-ND6P03923 174 aa12.49□□□□□ -0.41
SS18-208ENST00000577751 HAMPP81172 84 aa12.49□□□□□ -0.41
SS18-208ENST00000577751 OPRPNQ99935 248 aaPredicted RBP12.48□□□□□ -0.41
SS18-208ENST00000577751 AP5S1Q9NUS5 200 aa12.48□□□□□ -0.41
SS18-208ENST00000577751 GVQW2A0A096LPI5 108 aaPredicted RBP12.47□□□□□ -0.41
SS18-208ENST00000577751 TRAV13-1A0A0B4J241 112 aa12.47□□□□□ -0.41
SS18-208ENST00000577751 IFI27P40305 119 aaPredicted RBP12.47□□□□□ -0.41
SS18-208ENST00000577751 ORMDL2Q53FV1 153 aa12.47□□□□□ -0.41
SS18-208ENST00000577751 ALKBH7Q9BT30 221 aaPredicted RBP12.47□□□□□ -0.41
SS18-208ENST00000577751 TGIF2-C20orf24A0A0A6YYL0 155 aa12.46□□□□□ -0.41
SS18-208ENST00000577751 MRPL18Q9H0U6 180 aaKnown RBP12.46□□□□□ -0.41
SS18-208ENST00000577751 IGHV1-58A0A0C4DH39 117 aa12.45□□□□□ -0.42
SS18-208ENST00000577751 HIGD2BQ4VC39 106 aa12.45□□□□□ -0.42
SS18-208ENST00000577751 C2orf66Q6UXQ4 117 aa12.45□□□□□ -0.42
SS18-208ENST00000577751 SDIM1Q6ZPB5 146 aa12.45□□□□□ -0.42
SS18-208ENST00000577751 CYSLTR1Q9Y271 337 aa12.45□□□□□ -0.42
SS18-208ENST00000577751 IGLV4-3A0A075B6K6 122 aa12.44□□□□□ -0.42
SS18-208ENST00000577751 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.44□□□□□ -0.42
SS18-208ENST00000577751 CHAC1Q9BUX1 264 aa12.44□□□□□ -0.42
SS18-208ENST00000577751 SMR3BP02814 79 aaPredicted RBP12.43□□□□□ -0.42
SS18-208ENST00000577751 FABP9Q0Z7S8 132 aa12.43□□□□□ -0.42
SS18-208ENST00000577751 LINC01546A6NGU7 62 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 IGIPA6NJ69 53 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 COX7A2LO14548 114 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 SCXQ7RTU7 201 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 TMEM141Q96I45 108 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 YPEL4Q96NS1 127 aa12.42□□□□□ -0.42
SS18-208ENST00000577751 EPM2AB3EWF7 344 aa12.41□□□□□ -0.42
SS18-208ENST00000577751 NPSP0C0P6 89 aa12.41□□□□□ -0.42
SS18-208ENST00000577751 G0S2P27469 103 aa12.41□□□□□ -0.42
SS18-208ENST00000577751 SLC7A5P1Q8MH63 180 aa12.41□□□□□ -0.42
SS18-208ENST00000577751 PRSS3P2Q8NHM4 247 aa12.41□□□□□ -0.42
SS18-208ENST00000577751 IGHV3-64A0A075B6Q5 118 aa12.4□□□□□ -0.42
SS18-208ENST00000577751 IGHV3OR16-9A0A0B4J2B5 98 aa12.4□□□□□ -0.42
SS18-208ENST00000577751 IFITM10A6NMD0 228 aa12.4□□□□□ -0.42
SS18-208ENST00000577751 CIRBP-AS1Q8TBR5 109 aa12.4□□□□□ -0.42
SS18-208ENST00000577751 TRAPPC1Q9Y5R8 145 aa12.4□□□□□ -0.42
SS18-208ENST00000577751 MALP21145 153 aa12.39□□□□□ -0.43
SS18-208ENST00000577751 C5orf38Q86SI9 138 aa12.39□□□□□ -0.43
SS18-208ENST00000577751 AMELXQ99217 191 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms