RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LINC00167Q96N53 147 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 OR4C12Q96R67 309 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 LPAR5Q9H1C0 372 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 MARCOQ9UEW3 520 aaPredicted RBP3.17□□□□□ -1.9
VPS53-219ENST00000576019 F6UZH7 168 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 LY6LH3BQJ8 138 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 ZNF705BP0CI00 300 aaPredicted RBP3.16□□□□□ -1.9
VPS53-219ENST00000576019 HINT1P49773 126 aaPredicted RBP3.16□□□□□ -1.9
VPS53-219ENST00000576019 MRPS10P82664 201 aaKnown RBP3.16□□□□□ -1.9
VPS53-219ENST00000576019 NEDD8Q15843 81 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 GLYATL3Q5SZD4 288 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 TMEM14EPQ6UXP3 125 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 PATE2Q6UY27 113 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 PDCD10Q9BUL8 212 aa3.16□□□□□ -1.9
VPS53-219ENST00000576019 M0R1W7 72 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 CORTO00230 105 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 SDCBPO00560 298 aaPredicted RBP3.15□□□□□ -1.91
VPS53-219ENST00000576019 AKR1D1P51857 326 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 FOXA3P55318 350 aaPredicted RBP3.15□□□□□ -1.91
VPS53-219ENST00000576019 NCS1P62166 190 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 KRTAP13-2Q52LG2 175 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 UBE2DNLQ8IWF7 75 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 MRPS24Q96EL2 167 aaKnown RBP3.15□□□□□ -1.91
VPS53-219ENST00000576019 TNFSF18Q9UNG2 199 aa3.15□□□□□ -1.91
VPS53-219ENST00000576019 KMT2DO14686 5537 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 IGKV1D-42A0A075B6H8 117 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 TRBV27A0A0K0K1C4 114 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 NBDYA0A0U1RRE5 68 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 C20orf202A1L168 122 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 J3QR89 54 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 UBL3O95164 117 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 IFNA17P01571 189 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 CTSDP07339 412 aaPredicted RBP3.14□□□□□ -1.91
VPS53-219ENST00000576019 LINC00694P0DN24 101 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 AQP4P55087 323 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 ZNF90Q03938 601 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 CYYR1Q96J86 154 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 PRELID3AQ96N28 172 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 WFDC10AQ9H1F0 79 aa3.14□□□□□ -1.91
VPS53-219ENST00000576019 TMSB15BA0A087X1C1 80 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 HMSDA8MTL9 139 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 A8MWV9 139 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 PMP2P02689 132 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 IGLC6P0CF74 106 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 MGST1P10620 155 aaKnown RBP3.13□□□□□ -1.91
VPS53-219ENST00000576019 AZU1P20160 251 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 TMEM258P61165 79 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 RPS25P62851 125 aaKnown RBP3.13□□□□□ -1.91
VPS53-219ENST00000576019 ERHP84090 104 aaKnown RBP3.13□□□□□ -1.91
VPS53-219ENST00000576019 DEFB135Q30KP9 77 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 C7orf65Q6ZTY9 151 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 Q8IYB0 196 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 CHCHD1Q96BP2 118 aaKnown RBP3.13□□□□□ -1.91
VPS53-219ENST00000576019 NHP2Q9NX24 153 aaKnown RBP3.13□□□□□ -1.91
VPS53-219ENST00000576019 ZFP30Q9Y2G7 519 aa3.13□□□□□ -1.91
VPS53-219ENST00000576019 TRAV10A0A0B4J240 114 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 MUC21A0A0G2JKD1 596 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 MUC21A0A140T8X8 626 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 TCRAP04437 139 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 PKIAP61925 76 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 PPP3R1P63098 170 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 ESRGQ1W209 222 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 ACBD7Q8N6N7 88 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 OR5A2Q8NGI9 324 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 CMTM2Q8TAZ6 248 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 MYOZ3Q8TDC0 251 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 CST9LQ9H4G1 147 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 BANF2Q9H503 90 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 CYTL1Q9NRR1 136 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 NDUFB11Q9NX14 153 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 KAAG1Q9UBP8 84 aa3.12□□□□□ -1.91
VPS53-219ENST00000576019 FNDC10F2Z333 226 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 ZNF345Q14585 488 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 CDK5R1Q15078 307 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 HSD17B12Q53GQ0 312 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 SLC48A1Q6P1K1 146 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 TEX261Q6UWH6 196 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 FAM216BQ8N7L0 139 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 PSORS1C2Q9UIG4 136 aa3.11□□□□□ -1.91
VPS53-219ENST00000576019 IGLV10-54A0A075B6I4 117 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 A0A1W2PNN7 141 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 SLC25A5P05141 298 aaKnown RBP3.1□□□□□ -1.91
VPS53-219ENST00000576019 FGF7P21781 194 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 PRR9Q5T870 116 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 CTAGE3PQ8IX95 158 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 DEDD2Q8WXF8 326 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 DIRC1Q969H9 104 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 RETNLBQ9BQ08 111 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 TAS2R4Q9NYW5 299 aa3.1□□□□□ -1.91
VPS53-219ENST00000576019 TRAV1-1A0A0B4J248 108 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 M0R143 59 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 CCL25O15444 150 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 IGLV6-57P01721 117 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 C8orf59Q8N0T1 100 aaPredicted RBP3.09□□□□□ -1.91
VPS53-219ENST00000576019 TCTEX1D1Q8N7M0 179 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 OR4B1Q8NGF8 309 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 SFT2D1Q8WV19 159 aa3.09□□□□□ -1.91
VPS53-219ENST00000576019 Q9BRP9 147 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms