RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	TSHB	P01222	138 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422	SS18	Q15532	418 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422	ALKAL2	Q6UX46	152 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422	LYPD6B	Q8NI32	183 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422	LINC01600	Q96MT4	127 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422	TMEM191A	Q9H0A3	160 aa		10.57	□□□□□ -0.72
CLN3-231	ENST00000568422		A0A096LNI7	61 aa		10.56	□□□□□ -0.72
CLN3-231	ENST00000568422	TRBV27	A0A0K0K1C4	114 aa		10.56	□□□□□ -0.72
CLN3-231	ENST00000568422		A0A1B0GUT8	65 aa		10.56	□□□□□ -0.72
CLN3-231	ENST00000568422	CD164L2	Q6UWJ8	174 aa		10.56	□□□□□ -0.72
CLN3-231	ENST00000568422	CDC42SE2	Q9NRR3	84 aa		10.56	□□□□□ -0.72
CLN3-231	ENST00000568422	POLR2K	P53803	58 aa	Known RBP	10.55	□□□□□ -0.72
CLN3-231	ENST00000568422	ZNF664	Q8N3J9	261 aa		10.55	□□□□□ -0.72
CLN3-231	ENST00000568422	TSKU	Q8WUA8	353 aa		10.55	□□□□□ -0.72
CLN3-231	ENST00000568422	CARD19	Q96LW7	228 aa		10.55	□□□□□ -0.72
CLN3-231	ENST00000568422	C7orf77	A4D0Y5	90 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	HIGD1C	A8MV81	97 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	ZNF561-AS1	K7EIQ3	104 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	CEBPG	P53567	150 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	IFITM2	Q01629	132 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	TMEM242	Q9NWH2	141 aa		10.54	□□□□□ -0.72
CLN3-231	ENST00000568422	GAS8-AS1	O95177	125 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	PPP1R17	O96001	155 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	RAB4A	P20338	218 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	SMAGP	Q0VAQ4	97 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	SPINK6	Q6UWN8	80 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	LINC01551	Q86U37	167 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	ISOC2	Q96AB3	205 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	SMIM7	Q9BQ49	75 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	OSTC	Q9NRP0	149 aa		10.53	□□□□□ -0.72
CLN3-231	ENST00000568422	C1orf196	B1AJZ1	125 aa		10.52	□□□□□ -0.73
CLN3-231	ENST00000568422	VCY	O14598	125 aa		10.52	□□□□□ -0.73
CLN3-231	ENST00000568422	SYCN	Q0VAF6	134 aa		10.52	□□□□□ -0.73
CLN3-231	ENST00000568422	EIF5A2	Q9GZV4	153 aa	Known RBP	10.52	□□□□□ -0.73
CLN3-231	ENST00000568422	CSDC2	Q9Y534	153 aa	Known RBP	10.52	□□□□□ -0.73
CLN3-231	ENST00000568422	REG3G	Q6UW15	175 aa		10.51	□□□□□ -0.73
CLN3-231	ENST00000568422	LINC00526	Q96FQ7	95 aa		10.51	□□□□□ -0.73
CLN3-231	ENST00000568422	TNXB	P22105	4242 aa		10.51	□□□□□ -0.73
CLN3-231	ENST00000568422	ZNF727	A8MUV8	499 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422	FCER1G	P30273	86 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422	CAMP	P49913	170 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422	RIG	Q13278	110 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422		Q6ZRP5	223 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422	AMN1	Q8IY45	258 aa		10.5	□□□□□ -0.73
CLN3-231	ENST00000568422		A0A0J9YXV3	536 aa		10.49	□□□□□ -0.73
CLN3-231	ENST00000568422	LOC107984640	A0A0U1RRK4	108 aa		10.49	□□□□□ -0.73
CLN3-231	ENST00000568422	MAL	P21145	153 aa		10.49	□□□□□ -0.73
CLN3-231	ENST00000568422	COX7A2L	O14548	114 aa		10.48	□□□□□ -0.73
CLN3-231	ENST00000568422	PTTG1IP	P53801	180 aa		10.48	□□□□□ -0.73
CLN3-231	ENST00000568422	KIR2DL4	Q99706	377 aa		10.48	□□□□□ -0.73
CLN3-231	ENST00000568422	IGLV4-69	A0A075B6H9	119 aa		10.47	□□□□□ -0.73
CLN3-231	ENST00000568422	PPP1R2P9	O14990	202 aa		10.47	□□□□□ -0.73
CLN3-231	ENST00000568422	SUMO2	P61956	95 aa	Known RBP	10.47	□□□□□ -0.73
CLN3-231	ENST00000568422	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.47	□□□□□ -0.73
CLN3-231	ENST00000568422	UBE2D4	Q9Y2X8	147 aa		10.47	□□□□□ -0.73
CLN3-231	ENST00000568422	NRAC	Q8N912	160 aa		10.46	□□□□□ -0.73
CLN3-231	ENST00000568422	NUP35	Q8NFH5	326 aa		10.46	□□□□□ -0.73
CLN3-231	ENST00000568422	TMEM18	Q96B42	140 aa		10.46	□□□□□ -0.73
CLN3-231	ENST00000568422		V9GYV3	84 aa		10.46	□□□□□ -0.73
CLN3-231	ENST00000568422	SRP19	P09132	144 aa	Known RBP	10.45	□□□□□ -0.74
CLN3-231	ENST00000568422	KRTAP10-8	P60410	259 aa		10.45	□□□□□ -0.74
CLN3-231	ENST00000568422	C2orf48	Q96LS8	159 aa		10.45	□□□□□ -0.74
CLN3-231	ENST00000568422	TIMM21	Q9BVV7	248 aa		10.45	□□□□□ -0.74
CLN3-231	ENST00000568422	NAT8B	Q9UHF3	227 aa		10.45	□□□□□ -0.74
CLN3-231	ENST00000568422	SMKR1	H3BMG3	65 aa		10.44	□□□□□ -0.74
CLN3-231	ENST00000568422	APOM	O95445	188 aa		10.44	□□□□□ -0.74
CLN3-231	ENST00000568422	GAGE2B	Q13066	116 aa		10.44	□□□□□ -0.74
CLN3-231	ENST00000568422	FAM74A3	Q4VXF1	159 aa		10.44	□□□□□ -0.74
CLN3-231	ENST00000568422	CAMK2N2	Q96S95	79 aa		10.44	□□□□□ -0.74
CLN3-231	ENST00000568422	TRAV13-1	A0A0B4J241	112 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	LINC00862	A6NCI5	91 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	TCAP	O15273	167 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	TMEM241	Q24JQ0	296 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	C20orf78	Q9BR46	151 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	LRP2	P98164	4655 aa		10.43	□□□□□ -0.74
CLN3-231	ENST00000568422	FAM104B	Q5XKR9	115 aa		10.42	□□□□□ -0.74
CLN3-231	ENST00000568422	TRBV24-1	A0A075B6N3	115 aa		10.41	□□□□□ -0.74
CLN3-231	ENST00000568422		A0A1B0GW15	77 aa		10.41	□□□□□ -0.74
CLN3-231	ENST00000568422	RPL32	P62910	135 aa	Known RBP	10.41	□□□□□ -0.74
CLN3-231	ENST00000568422	RNF151	Q2KHN1	245 aa		10.41	□□□□□ -0.74
CLN3-231	ENST00000568422	MRPL51	Q4U2R6	128 aa	Known RBP	10.41	□□□□□ -0.74
CLN3-231	ENST00000568422	RNF213	Q63HN8	5207 aa		10.41	□□□□□ -0.74
CLN3-231	ENST00000568422		A0A1W2PNN7	141 aa		10.4	□□□□□ -0.74
CLN3-231	ENST00000568422		F8WDY8	70 aa		10.4	□□□□□ -0.74
CLN3-231	ENST00000568422	RNASE13	Q5GAN3	156 aa	Known RBP	10.4	□□□□□ -0.74
CLN3-231	ENST00000568422	CLLU1	Q5K131	121 aa		10.4	□□□□□ -0.74
CLN3-231	ENST00000568422	C5orf38	Q86SI9	138 aa		10.4	□□□□□ -0.74
CLN3-231	ENST00000568422	OR10D4P	Q8NGN7	298 aa		10.4	□□□□□ -0.74
CLN3-231	ENST00000568422	SMIM27	A0A1W2PRY6	76 aa		10.39	□□□□□ -0.75
CLN3-231	ENST00000568422	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	10.39	□□□□□ -0.75
CLN3-231	ENST00000568422	RPL23	P62829	140 aa	Known RBP	10.39	□□□□□ -0.75
CLN3-231	ENST00000568422	C9orf116	Q5BN46	136 aa	Predicted RBP	10.39	□□□□□ -0.75
CLN3-231	ENST00000568422		Q6ZUT4	128 aa		10.39	□□□□□ -0.75
CLN3-231	ENST00000568422	CKS2	P33552	79 aa		10.38	□□□□□ -0.75
CLN3-231	ENST00000568422	SPAG11B	Q08648	103 aa		10.38	□□□□□ -0.75
CLN3-231	ENST00000568422	ADIRF	Q15847	76 aa		10.38	□□□□□ -0.75
CLN3-231	ENST00000568422	NAT8	Q9UHE5	227 aa		10.38	□□□□□ -0.75
CLN3-231	ENST00000568422	MT-ND6	P03923	174 aa		10.37	□□□□□ -0.75
CLN3-231	ENST00000568422	RPL18A	Q02543	176 aa	Known RBP	10.37	□□□□□ -0.75
CLN3-231	ENST00000568422	TNFRSF6B	O95407	300 aa		10.36	□□□□□ -0.75

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