RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 C5orf17Q8NAS9 161 aa7.15□□□□□ -1.26
CLK3-222ENST00000568232 BIN3Q9NQY0 253 aa7.15□□□□□ -1.26
CLK3-222ENST00000568232 TRBV6-1A0A0K0K1D8 114 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 A0A1W2PRE2 83 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 RAB5AP20339 215 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 CRIP1P50238 77 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 RAB4BP61018 213 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 SUMO1P63165 101 aaKnown RBP7.14□□□□□ -1.27
CLK3-222ENST00000568232 ZNF56Q15929 161 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 CST9LP1Q5W188 147 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 IMMP2LQ96T52 175 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 EPDR1Q9UM22 224 aa7.14□□□□□ -1.27
CLK3-222ENST00000568232 TRBV25-1A0A075B6N4 114 aa7.13□□□□□ -1.27
CLK3-222ENST00000568232 TMSB15BA0A087X1C1 80 aa7.13□□□□□ -1.27
CLK3-222ENST00000568232 GAGE12HA6NDE8 117 aa7.13□□□□□ -1.27
CLK3-222ENST00000568232 GZMBP10144 247 aa7.13□□□□□ -1.27
CLK3-222ENST00000568232 HIST1H2BAQ96A08 127 aa7.13□□□□□ -1.27
CLK3-222ENST00000568232 TRBV24-1A0A075B6N3 115 aa7.12□□□□□ -1.27
CLK3-222ENST00000568232 S100A9P06702 114 aaKnown RBP7.12□□□□□ -1.27
CLK3-222ENST00000568232 IQCJQ1A5X6 159 aa7.12□□□□□ -1.27
CLK3-222ENST00000568232 TMEM97Q5BJF2 176 aa7.12□□□□□ -1.27
CLK3-222ENST00000568232 ZFP82Q8N141 532 aa7.12□□□□□ -1.27
CLK3-222ENST00000568232 C11orf52Q96A22 123 aa7.12□□□□□ -1.27
CLK3-222ENST00000568232 TRAV9-1A0A075B6T8 112 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 SH2D1AO60880 128 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 UBE2G2P60604 165 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 ADIRFQ15847 76 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 ZNF674Q2M3X9 581 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 LINC00474Q9P2X8 69 aa7.11□□□□□ -1.27
CLK3-222ENST00000568232 IGHV1-24A0A0C4DH33 117 aa7.1□□□□□ -1.27
CLK3-222ENST00000568232 F5H697 171 aa7.1□□□□□ -1.27
CLK3-222ENST00000568232 RPL23P62829 140 aaKnown RBP7.1□□□□□ -1.27
CLK3-222ENST00000568232 SMIM12Q96EX1 92 aa7.1□□□□□ -1.27
CLK3-222ENST00000568232 LINC00526Q96FQ7 95 aa7.1□□□□□ -1.27
CLK3-222ENST00000568232 IGKV3OR2-268A0A0C4DH90 116 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 A0A1B0GUV1 79 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 AKR1C3P42330 323 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 C1orf137Q5JT78 98 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 LCE5AQ5TCM9 118 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 LINC01551Q86U37 167 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 YPEL4Q96NS1 127 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 KRTAP9-3Q9BYQ3 159 aa7.09□□□□□ -1.27
CLK3-222ENST00000568232 MUC21A0A140T8X8 626 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 A0A1W2PNN7 141 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 MT-ND6P03923 174 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 COX19Q49B96 90 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 OR10AG1Q8NH19 301 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 ISOC2Q96AB3 205 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 CBY1Q9Y3M2 126 aa7.08□□□□□ -1.28
CLK3-222ENST00000568232 GVQW2A0A096LPI5 108 aaPredicted RBP7.07□□□□□ -1.28
CLK3-222ENST00000568232 S100A8P05109 93 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 GNG4P50150 75 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 LINC00310P59036 64 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 Q86TA4 180 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 FER1L6-AS1Q8NA97 138 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 MUC17Q685J3 4493 aa7.07□□□□□ -1.28
CLK3-222ENST00000568232 GATCO43716 136 aaKnown RBP7.06□□□□□ -1.28
CLK3-222ENST00000568232 FAM162BQ5T6X4 162 aa7.06□□□□□ -1.28
CLK3-222ENST00000568232 DIRC1Q969H9 104 aa7.06□□□□□ -1.28
CLK3-222ENST00000568232 TMEM243Q9BU79 118 aa7.06□□□□□ -1.28
CLK3-222ENST00000568232 RPL35P42766 123 aaKnown RBP7.05□□□□□ -1.28
CLK3-222ENST00000568232 PTTG1IPP53801 180 aa7.05□□□□□ -1.28
CLK3-222ENST00000568232 GAGE2BQ13066 116 aa7.05□□□□□ -1.28
CLK3-222ENST00000568232 LINC00518Q8N0U6 118 aa7.05□□□□□ -1.28
CLK3-222ENST00000568232 CHCHD10Q8WYQ3 142 aaPredicted RBP7.05□□□□□ -1.28
CLK3-222ENST00000568232 OSTCQ9NRP0 149 aa7.05□□□□□ -1.28
CLK3-222ENST00000568232 IGLV1-50A0A075B6I6 118 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 C5orf52A6NGY3 159 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 H0Y9J4 135 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 PEX7O00628 323 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 TSPAN13O95857 204 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 KRTAP1-4P0C5Y4 121 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 AMTP48728 403 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 PHF5AQ7RTV0 110 aaKnown RBP7.04□□□□□ -1.28
CLK3-222ENST00000568232 CARD19Q96LW7 228 aa7.04□□□□□ -1.28
CLK3-222ENST00000568232 IGLV7-43P04211 117 aa7.03□□□□□ -1.28
CLK3-222ENST00000568232 FAM231DQ6ZW35 169 aa7.03□□□□□ -1.28
CLK3-222ENST00000568232 COX8CQ7Z4L0 72 aa7.03□□□□□ -1.28
CLK3-222ENST00000568232 OCC1Q8TAD7 63 aa7.03□□□□□ -1.28
CLK3-222ENST00000568232 FMC1Q96HJ9 113 aa7.03□□□□□ -1.28
CLK3-222ENST00000568232 TGIF2-C20orf24A0A0A6YYL0 155 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 UBE2L6O14933 153 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 CXCL1P09341 107 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 UBE2G1P62253 170 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 FOXI1Q12951 378 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 CENPWQ5EE01 88 aa7.02□□□□□ -1.29
CLK3-222ENST00000568232 M0QY20 66 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 UBE2D1P51668 147 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 SNRPEP62304 92 aaKnown RBP7.01□□□□□ -1.29
CLK3-222ENST00000568232 COTL1Q14019 142 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 C9orf116Q5BN46 136 aaPredicted RBP7.01□□□□□ -1.29
CLK3-222ENST00000568232 SPANXN1Q5VSR9 72 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 RASL11AQ6T310 242 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 BAGE2Q86Y30 109 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 PKIGQ9Y2B9 76 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 ZFP30Q9Y2G7 519 aa7.01□□□□□ -1.29
CLK3-222ENST00000568232 TRBV20OR9-2A0A075B6H5 130 aa7□□□□□ -1.29
CLK3-222ENST00000568232 TRGC2P03986 189 aa7□□□□□ -1.29
CLK3-222ENST00000568232 SMIM6P0DI80 62 aa7□□□□□ -1.29
CLK3-222ENST00000568232 SMIM17P0DL12 118 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms