RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 PPP1R17O96001 155 aa11.79□□□□□ -0.52
CLN3-214ENST00000565140 FOXI1Q12951 378 aa11.79□□□□□ -0.52
CLN3-214ENST00000565140 MRPL54Q6P161 138 aaKnown RBP11.79□□□□□ -0.52
CLN3-214ENST00000565140 MRPL52Q86TS9 123 aaKnown RBP11.79□□□□□ -0.52
CLN3-214ENST00000565140 CDC42SE2Q9NRR3 84 aa11.79□□□□□ -0.52
CLN3-214ENST00000565140 AP5S1Q9NUS5 200 aa11.79□□□□□ -0.52
CLN3-214ENST00000565140 LINC00959A0A1B0GUT2 108 aa11.78□□□□□ -0.52
CLN3-214ENST00000565140 A0A1B0GXF2 115 aa11.78□□□□□ -0.52
CLN3-214ENST00000565140 C7orf77A4D0Y5 90 aa11.78□□□□□ -0.52
CLN3-214ENST00000565140 FCER1GP30273 86 aa11.78□□□□□ -0.52
CLN3-214ENST00000565140 KRTAP10-4P60372 401 aaPredicted RBP11.78□□□□□ -0.52
CLN3-214ENST00000565140 CFAP161Q6P656 301 aa11.78□□□□□ -0.52
CLN3-214ENST00000565140 LINC00862A6NCI5 91 aa11.77□□□□□ -0.53
CLN3-214ENST00000565140 HIGD2BQ4VC39 106 aa11.77□□□□□ -0.53
CLN3-214ENST00000565140 ZNF664Q8N3J9 261 aa11.77□□□□□ -0.53
CLN3-214ENST00000565140 TRBV24-1A0A075B6N3 115 aa11.76□□□□□ -0.53
CLN3-214ENST00000565140 CCL25O15444 150 aa11.76□□□□□ -0.53
CLN3-214ENST00000565140 CKS2P33552 79 aa11.76□□□□□ -0.53
CLN3-214ENST00000565140 XCL1P47992 114 aa11.76□□□□□ -0.53
CLN3-214ENST00000565140 HBBP68871 147 aa11.76□□□□□ -0.53
CLN3-214ENST00000565140 IGHV3-64A0A075B6Q5 118 aa11.75□□□□□ -0.53
CLN3-214ENST00000565140 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.75□□□□□ -0.53
CLN3-214ENST00000565140 PPP1R2P9O14990 202 aa11.75□□□□□ -0.53
CLN3-214ENST00000565140 RAB14P61106 215 aa11.75□□□□□ -0.53
CLN3-214ENST00000565140 KIR2DL4Q99706 377 aa11.75□□□□□ -0.53
CLN3-214ENST00000565140 C20orf78Q9BR46 151 aa11.75□□□□□ -0.53
CLN3-214ENST00000565140 D6R8Y8 96 aa11.74□□□□□ -0.53
CLN3-214ENST00000565140 TNFRSF6BO95407 300 aa11.74□□□□□ -0.53
CLN3-214ENST00000565140 UBE2D4Q9Y2X8 147 aa11.74□□□□□ -0.53
CLN3-214ENST00000565140 GVQW2A0A096LPI5 108 aaPredicted RBP11.73□□□□□ -0.53
CLN3-214ENST00000565140 F8W036 122 aa11.73□□□□□ -0.53
CLN3-214ENST00000565140 S100A8P05109 93 aa11.73□□□□□ -0.53
CLN3-214ENST00000565140 CHTF8P0CG12 524 aa11.73□□□□□ -0.53
CLN3-214ENST00000565140 CIRBPQ14011 172 aaKnown RBP11.73□□□□□ -0.53
CLN3-214ENST00000565140 NPYP01303 97 aa11.72□□□□□ -0.53
CLN3-214ENST00000565140 RPL32P62910 135 aaKnown RBP11.72□□□□□ -0.53
CLN3-214ENST00000565140 SS18Q15532 418 aa11.72□□□□□ -0.53
CLN3-214ENST00000565140 RNASE13Q5GAN3 156 aaKnown RBP11.72□□□□□ -0.53
CLN3-214ENST00000565140 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
CLN3-214ENST00000565140 PNRC1Q12796 327 aaPredicted RBP11.7□□□□□ -0.54
CLN3-214ENST00000565140 CLLU1Q5K131 121 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 CD164L2Q6UWJ8 174 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 ATP5L2Q7Z4Y8 100 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 LINC00526Q96FQ7 95 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 SMIM2Q9BVW6 85 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 PKHD1L1Q86WI1 4243 aa11.7□□□□□ -0.54
CLN3-214ENST00000565140 RPL39P62891 51 aaKnown RBP11.69□□□□□ -0.54
CLN3-214ENST00000565140 COX6A2Q02221 97 aa11.69□□□□□ -0.54
CLN3-214ENST00000565140 TIMM21Q9BVV7 248 aa11.69□□□□□ -0.54
CLN3-214ENST00000565140 LRP1Q07954 4544 aaKnown RBP11.68□□□□□ -0.54
CLN3-214ENST00000565140 IGHV1-58A0A0C4DH39 117 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 TCAPO15273 167 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 PPBPP02775 128 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 MT-ND4LP03901 98 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 RPL37AP61513 92 aaKnown RBP11.68□□□□□ -0.54
CLN3-214ENST00000565140 Q6ZUT4 128 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 PRSS3P2Q8NHM4 247 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 SPACA4Q8TDM5 124 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 FAM104AQ969W3 186 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 ANAPC16Q96DE5 110 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 DPH3Q96FX2 82 aa11.68□□□□□ -0.54
CLN3-214ENST00000565140 A0A087WYN8 130 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 C1orf196B1AJZ1 125 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 PHOX2AO14813 284 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 IFITM2Q01629 132 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 SMAGPQ0VAQ4 97 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 TMEM136Q6ZRR5 245 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 ORMDL3Q8N138 153 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 TMEM18Q96B42 140 aa11.67□□□□□ -0.54
CLN3-214ENST00000565140 TRAV13-1A0A0B4J241 112 aa11.66□□□□□ -0.54
CLN3-214ENST00000565140 PRELID3AQ96N28 172 aa11.66□□□□□ -0.54
CLN3-214ENST00000565140 OPRPNQ99935 248 aaPredicted RBP11.65□□□□□ -0.54
CLN3-214ENST00000565140 KRTAP29-1A8MX34 341 aaPredicted RBP11.64□□□□□ -0.55
CLN3-214ENST00000565140 J3QL48 77 aa11.64□□□□□ -0.55
CLN3-214ENST00000565140 HNRNPA3P51991 378 aaKnown RBP11.64□□□□□ -0.55
CLN3-214ENST00000565140 PLAC8Q9NZF1 115 aa11.64□□□□□ -0.55
CLN3-214ENST00000565140 IGKV2-24A0A0C4DH68 120 aa11.63□□□□□ -0.55
CLN3-214ENST00000565140 COX7A2LO14548 114 aa11.63□□□□□ -0.55
CLN3-214ENST00000565140 A0A096LNI7 61 aa11.62□□□□□ -0.55
CLN3-214ENST00000565140 ZNF561-AS1K7EIQ3 104 aa11.62□□□□□ -0.55
CLN3-214ENST00000565140 ADCYAP1P18509 176 aa11.62□□□□□ -0.55
CLN3-214ENST00000565140 MAJINQ3KP22 176 aa11.62□□□□□ -0.55
CLN3-214ENST00000565140 C5orf38Q86SI9 138 aa11.62□□□□□ -0.55
CLN3-214ENST00000565140 FAT3Q8TDW7 4589 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 LOC389332A0A1B0GUA5 103 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 PRSS47A8MTI9 375 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 MALP21145 153 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 CARD19Q96LW7 228 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 SPANXA1Q9NS26 97 aa11.61□□□□□ -0.55
CLN3-214ENST00000565140 IGLV4-69A0A075B6H9 119 aa11.6□□□□□ -0.55
CLN3-214ENST00000565140 MRPS36P82909 103 aaKnown RBP11.6□□□□□ -0.55
CLN3-214ENST00000565140 SYCNQ0VAF6 134 aa11.6□□□□□ -0.55
CLN3-214ENST00000565140 TMEM218A2RU14 115 aa11.59□□□□□ -0.55
CLN3-214ENST00000565140 RAB5AP20339 215 aa11.59□□□□□ -0.55
CLN3-214ENST00000565140 UQCC3Q6UW78 93 aa11.59□□□□□ -0.55
CLN3-214ENST00000565140 LAMTOR2Q9Y2Q5 125 aa11.59□□□□□ -0.55
CLN3-214ENST00000565140 STPG4Q8N801 248 aa11.58□□□□□ -0.56
CLN3-214ENST00000565140 Q6ZRU5 148 aa11.57□□□□□ -0.56
CLN3-214ENST00000565140 MAP1LC3AQ9H492 121 aa11.57□□□□□ -0.56
CLN3-214ENST00000565140 IGHV3OR16-9A0A0B4J2B5 98 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms