RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 FAM229AH3BQW9 127 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 H7C423 109 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 PHOX2AO14813 284 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 APOC3P02656 99 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 S100PP25815 95 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 NDUFA5Q16718 116 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 TMEM136Q6ZRR5 245 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 ORMDL3Q8N138 153 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 PRR34Q9NV39 138 aa8.91□□□□□ -0.98
VPS9D1-204ENST00000565023 NPYP01303 97 aa8.9□□□□□ -0.98
VPS9D1-204ENST00000565023 C14orf177Q52M58 125 aa8.9□□□□□ -0.98
VPS9D1-204ENST00000565023 SVBPQ8N300 66 aa8.9□□□□□ -0.98
VPS9D1-204ENST00000565023 FAT1Q14517 4588 aa8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 IGKV2-29A2NJV5 120 aaPredicted RBP8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 SNAPINO95295 136 aa8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 PRELID3AQ96N28 172 aa8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 KIR2DL4Q99706 377 aa8.89□□□□□ -0.99
VPS9D1-204ENST00000565023 PRSS1P07477 247 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 FGF6P10767 208 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 FCER1GP30273 86 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 AMMECR1LQ6DCA0 310 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 RNASEKQ6P5S7 137 aaKnown RBP8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 SMIM2Q9BVW6 85 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 LAMTOR2Q9Y2Q5 125 aa8.88□□□□□ -0.99
VPS9D1-204ENST00000565023 PRSS47A8MTI9 375 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 TCAPO15273 167 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 ZNF25P17030 456 aaPredicted RBP8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 KRTAP26-1Q6PEX3 210 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 SCXQ7RTU7 201 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 SLC7A5P1Q8MH63 180 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 GNB1LQ9BYB4 327 aa8.87□□□□□ -0.99
VPS9D1-204ENST00000565023 Q6ZSA8 131 aa8.86□□□□□ -0.99
VPS9D1-204ENST00000565023 MRPL52Q86TS9 123 aaKnown RBP8.86□□□□□ -0.99
VPS9D1-204ENST00000565023 LINC00528Q8N1L1 170 aa8.86□□□□□ -0.99
VPS9D1-204ENST00000565023 SRRM2Q9UQ35 2752 aaKnown RBP8.86□□□□□ -0.99
VPS9D1-204ENST00000565023 COX19Q49B96 90 aa8.85□□□□□ -0.99
VPS9D1-204ENST00000565023 TRAV8-4A0A0B4J246 113 aa8.84□□□□□ -0.99
VPS9D1-204ENST00000565023 hDV102S1A0JD36 115 aa8.84□□□□□ -0.99
VPS9D1-204ENST00000565023 MAP1LC3AQ9H492 121 aa8.84□□□□□ -0.99
VPS9D1-204ENST00000565023 VPS13BQ7Z7G8 4022 aa8.84□□□□□ -0.99
VPS9D1-204ENST00000565023 GAGE12HA6NDE8 117 aa8.83□□□□□ -1
VPS9D1-204ENST00000565023 MT-ND6P03923 174 aa8.83□□□□□ -1
VPS9D1-204ENST00000565023 OR5A1Q8NGJ0 315 aa8.83□□□□□ -1
VPS9D1-204ENST00000565023 TMEM101Q96IK0 257 aa8.83□□□□□ -1
VPS9D1-204ENST00000565023 CSDC2Q9Y534 153 aaKnown RBP8.83□□□□□ -1
VPS9D1-204ENST00000565023 TGIF2-C20orf24A0A0A6YYL0 155 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 LOC389332A0A1B0GUA5 103 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 SMAGPQ0VAQ4 97 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 KIAA1644Q3SXP7 199 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 Q8N8P6 123 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 CIRBP-AS1Q8TBR5 109 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 TMEM18Q96B42 140 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 CHAC1Q9BUX1 264 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 TIMM21Q9BVV7 248 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 CDC42SE2Q9NRR3 84 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 UBE2D4Q9Y2X8 147 aa8.82□□□□□ -1
VPS9D1-204ENST00000565023 FLG2Q5D862 2391 aaPredicted RBP8.81□□□□□ -1
VPS9D1-204ENST00000565023 PLA2G1BP04054 148 aaKnown RBP8.81□□□□□ -1
VPS9D1-204ENST00000565023 RAB5AP20339 215 aa8.81□□□□□ -1
VPS9D1-204ENST00000565023 YPEL4Q96NS1 127 aa8.81□□□□□ -1
VPS9D1-204ENST00000565023 AP5S1Q9NUS5 200 aa8.81□□□□□ -1
VPS9D1-204ENST00000565023 DGAT2L7PQ6IED9 249 aa8.8□□□□□ -1
VPS9D1-204ENST00000565023 ZNF664Q8N3J9 261 aa8.8□□□□□ -1
VPS9D1-204ENST00000565023 C9orf163Q8N9P6 203 aa8.8□□□□□ -1
VPS9D1-204ENST00000565023 CHCHD10Q8WYQ3 142 aaPredicted RBP8.8□□□□□ -1
VPS9D1-204ENST00000565023 ALKBH7Q9BT30 221 aaPredicted RBP8.8□□□□□ -1
VPS9D1-204ENST00000565023 MRPL18Q9H0U6 180 aaKnown RBP8.8□□□□□ -1
VPS9D1-204ENST00000565023 HMCN2Q8NDA2 5059 aa8.79□□□□□ -1
VPS9D1-204ENST00000565023 K7EMI3 77 aa8.79□□□□□ -1
VPS9D1-204ENST00000565023 RPL39P62891 51 aaKnown RBP8.79□□□□□ -1
VPS9D1-204ENST00000565023 HIGD2BQ4VC39 106 aa8.79□□□□□ -1
VPS9D1-204ENST00000565023 NXT2Q9NPJ8 142 aaKnown RBP8.79□□□□□ -1
VPS9D1-204ENST00000565023 IFI27P40305 119 aaPredicted RBP8.78□□□□□ -1
VPS9D1-204ENST00000565023 FABP9Q0Z7S8 132 aa8.78□□□□□ -1
VPS9D1-204ENST00000565023 SPANXA1Q9NS26 97 aa8.78□□□□□ -1
VPS9D1-204ENST00000565023 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.78□□□□□ -1
VPS9D1-204ENST00000565023 LINC00959A0A1B0GUT2 108 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 XCL1P47992 114 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 Q6ZUT4 128 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 C15orf56Q8N910 161 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 FAM104AQ969W3 186 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 SMCO4Q9NRQ5 59 aa8.77□□□□□ -1.01
VPS9D1-204ENST00000565023 PANO1I0J062 215 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 SLPIP03973 132 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 MRPS36P82909 103 aaKnown RBP8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 ORMDL2Q53FV1 153 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 CBLN2Q8IUK8 224 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 DPH3Q96FX2 82 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 PYGO1Q9Y3Y4 419 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 TRAPPC1Q9Y5R8 145 aa8.76□□□□□ -1.01
VPS9D1-204ENST00000565023 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 CCL25O15444 150 aa8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 CHTF8P0CG12 524 aa8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 SS18Q15532 418 aa8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 RNASE13Q5GAN3 156 aaKnown RBP8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 CFAP161Q6P656 301 aa8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 SDIM1Q6ZPB5 146 aa8.75□□□□□ -1.01
VPS9D1-204ENST00000565023 IGHV3-64A0A075B6Q5 118 aa8.74□□□□□ -1.01
VPS9D1-204ENST00000565023 LINC01546A6NGU7 62 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms