RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SPACA4Q8TDM5 124 aa6.88□□□□□ -1.31
VPS39-208ENST00000564994 MRAP2Q96G30 205 aa6.88□□□□□ -1.31
VPS39-208ENST00000564994 KRTAP3-3Q9BYR6 98 aa6.88□□□□□ -1.31
VPS39-208ENST00000564994 KRTAP3-2Q9BYR7 98 aa6.88□□□□□ -1.31
VPS39-208ENST00000564994 A0A087WYN8 130 aa6.87□□□□□ -1.31
VPS39-208ENST00000564994 GVQW2A0A096LPI5 108 aaPredicted RBP6.87□□□□□ -1.31
VPS39-208ENST00000564994 LINC00959A0A1B0GUT2 108 aa6.87□□□□□ -1.31
VPS39-208ENST00000564994 NRACQ8N912 160 aa6.87□□□□□ -1.31
VPS39-208ENST00000564994 BTF3L4Q96K17 158 aa6.87□□□□□ -1.31
VPS39-208ENST00000564994 CCL25O15444 150 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 OXTP01178 125 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 XCL1P47992 114 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 COX6A2Q02221 97 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 RIGQ13278 110 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 ADIRFQ15847 76 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 FAM74A3Q4VXF1 159 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 MRPL52Q86TS9 123 aaKnown RBP6.86□□□□□ -1.31
VPS39-208ENST00000564994 PRSS3P2Q8NHM4 247 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 TMEM101Q96IK0 257 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 CDC42SE2Q9NRR3 84 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 NAT8BQ9UHF3 227 aa6.86□□□□□ -1.31
VPS39-208ENST00000564994 C7orf77A4D0Y5 90 aa6.85□□□□□ -1.31
VPS39-208ENST00000564994 PLAC8Q9NZF1 115 aa6.85□□□□□ -1.31
VPS39-208ENST00000564994 NAT8Q9UHE5 227 aa6.85□□□□□ -1.31
VPS39-208ENST00000564994 SMIM27A0A1W2PRY6 76 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 VCYO14598 125 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 SUMO2P61956 95 aaKnown RBP6.84□□□□□ -1.31
VPS39-208ENST00000564994 MRPL51Q4U2R6 128 aaKnown RBP6.84□□□□□ -1.31
VPS39-208ENST00000564994 FAM104BQ5XKR9 115 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 ZNF664Q8N3J9 261 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 LINC00526Q96FQ7 95 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 DPH3Q96FX2 82 aa6.84□□□□□ -1.31
VPS39-208ENST00000564994 IGKV2-24A0A0C4DH68 120 aa6.83□□□□□ -1.32
VPS39-208ENST00000564994 PEA15Q15121 130 aa6.83□□□□□ -1.32
VPS39-208ENST00000564994 UBR4Q5T4S7 5183 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 TNXBP22105 4242 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 A0A096LNI7 61 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 IGHV1-58A0A0C4DH39 117 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 PPP1R17O96001 155 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 FCER1GP30273 86 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 CAMPP49913 170 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 SS18Q15532 418 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 MAJINQ3KP22 176 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 RNASE13Q5GAN3 156 aaKnown RBP6.82□□□□□ -1.32
VPS39-208ENST00000564994 CD164L2Q6UWJ8 174 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 UBE2D4Q9Y2X8 147 aa6.82□□□□□ -1.32
VPS39-208ENST00000564994 PHOX2AO14813 284 aa6.81□□□□□ -1.32
VPS39-208ENST00000564994 KIR2DL4Q99706 377 aa6.81□□□□□ -1.32
VPS39-208ENST00000564994 SMDT1Q9H4I9 107 aa6.81□□□□□ -1.32
VPS39-208ENST00000564994 CSDC2Q9Y534 153 aaKnown RBP6.81□□□□□ -1.32
VPS39-208ENST00000564994 TRBV24-1A0A075B6N3 115 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 A0A1B0GXF2 115 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 LINC00862A6NCI5 91 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 PPP1R2P9O14990 202 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 MT1HL1P0DM35 61 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 MRPL54Q6P161 138 aaKnown RBP6.8□□□□□ -1.32
VPS39-208ENST00000564994 Q6ZUT4 128 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 STPG4Q8N801 248 aa6.8□□□□□ -1.32
VPS39-208ENST00000564994 A0A1B0GW15 77 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 C1orf196B1AJZ1 125 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 TNFRSF6BO95407 300 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 CKS2P33552 79 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 RPL32P62910 135 aaKnown RBP6.79□□□□□ -1.32
VPS39-208ENST00000564994 SERTAD4-AS1Q5TG53 156 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 Q6ZRU5 148 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 FAM104AQ969W3 186 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 CARD19Q96LW7 228 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 C20orf78Q9BR46 151 aa6.79□□□□□ -1.32
VPS39-208ENST00000564994 IGLV4-69A0A075B6H9 119 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 TRAV13-1A0A0B4J241 112 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 D6R8Y8 96 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 ZNF561-AS1K7EIQ3 104 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 NPYP01303 97 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 RPL39P62891 51 aaKnown RBP6.78□□□□□ -1.32
VPS39-208ENST00000564994 HBBP68871 147 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 SYCNQ0VAF6 134 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 C7orf33Q8WU49 177 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 TIMM21Q9BVV7 248 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 SMIM2Q9BVW6 85 aa6.78□□□□□ -1.32
VPS39-208ENST00000564994 COX7A2LO14548 114 aa6.77□□□□□ -1.33
VPS39-208ENST00000564994 SMAGPQ0VAQ4 97 aa6.77□□□□□ -1.33
VPS39-208ENST00000564994 F8W036 122 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 TCAPO15273 167 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 MALP21145 153 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 PRR3P79522 188 aaKnown RBP6.76□□□□□ -1.33
VPS39-208ENST00000564994 C5orf38Q86SI9 138 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 TMEM18Q96B42 140 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 OPRPNQ99935 248 aaPredicted RBP6.76□□□□□ -1.33
VPS39-208ENST00000564994 LINC00474Q9P2X8 69 aa6.76□□□□□ -1.33
VPS39-208ENST00000564994 S100A8P05109 93 aa6.75□□□□□ -1.33
VPS39-208ENST00000564994 PPBPP02775 128 aa6.74□□□□□ -1.33
VPS39-208ENST00000564994 PTTG1IPP53801 180 aa6.74□□□□□ -1.33
VPS39-208ENST00000564994 ATP5L2Q7Z4Y8 100 aa6.74□□□□□ -1.33
VPS39-208ENST00000564994 CAMK2N2Q96S95 79 aa6.74□□□□□ -1.33
VPS39-208ENST00000564994 PKIGQ9Y2B9 76 aa6.74□□□□□ -1.33
VPS39-208ENST00000564994 IGHV3OR16-9A0A0B4J2B5 98 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 LOC107984640A0A0U1RRK4 108 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 A0A1W2PNN7 141 aa6.73□□□□□ -1.33
VPS39-208ENST00000564994 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.73□□□□□ -1.33
VPS39-208ENST00000564994 MRPS36P82909 103 aaKnown RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms