RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 IGKV1-33P01594 117 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 CISD3P0C7P0 127 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 SAA2P0DJI9 122 aaPredicted RBP3.4□□□□□ -1.87
VPS35-205ENST00000563984 RANBP2P49792 3224 aaKnown RBP3.4□□□□□ -1.87
VPS35-205ENST00000563984 LYPD6Q86Y78 171 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 NPBQ8NG41 125 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 LINC01560Q8TB33 94 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 TMEM254Q8TBM7 123 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 IMMP1LQ96LU5 166 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 C8orf17Q9NRJ1 99 aa3.4□□□□□ -1.87
VPS35-205ENST00000563984 IGLV1-50A0A075B6I6 118 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 IGHV3-49A0A0A0MS15 119 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 A0A0J9YY99 117 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 RPL37AP8A6NKH3 93 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 PPP1R17O96001 155 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 IGLV3-21P80748 117 aaPredicted RBP3.39□□□□□ -1.87
VPS35-205ENST00000563984 C2orf66Q6UXQ4 117 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 ABCA7Q8IZY2 2146 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 RPP21Q9H633 154 aaKnown RBP3.39□□□□□ -1.87
VPS35-205ENST00000563984 U3KQK5 164 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 ZNF318Q5VUA4 2279 aa3.39□□□□□ -1.87
VPS35-205ENST00000563984 GON4LQ3T8J9 2241 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 A0A0J9YXY3 114 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 F8VRH5 84 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 IGLV2-23P01705 113 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 RNASE13Q5GAN3 156 aaKnown RBP3.38□□□□□ -1.87
VPS35-205ENST00000563984 C9orf66Q5T8R8 295 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 CAMK2N1Q7Z7J9 78 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 Q8NDZ9 215 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 C7orf33Q8WU49 177 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 CHCHD7Q9BUK0 85 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 KIF25-AS1Q9Y6Z4 181 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 S4R3C0 116 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 MYO7AQ13402 2215 aa3.38□□□□□ -1.87
VPS35-205ENST00000563984 COL5A1P20908 1838 aaPredicted RBP3.37□□□□□ -1.87
VPS35-205ENST00000563984 IGLV8-61A0A075B6I0 122 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 IGLV4-3A0A075B6K6 122 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 IGHV3-73A0A0B4J1V6 119 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 TRAV40A0A0B4J280 105 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 ELOF1P60002 83 aaKnown RBP3.37□□□□□ -1.87
VPS35-205ENST00000563984 C14orf132Q9NPU4 83 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 TMEM14AQ9Y6G1 99 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 PCNX2A6NKB5 2137 aa3.37□□□□□ -1.87
VPS35-205ENST00000563984 COL4A5P29400 1685 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 CENPFP49454 3210 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 TRAV12-3A0A0B4J271 114 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 IGHV3-66A0A0C4DH42 116 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 A8MWP4 228 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 C10orf142B7Z368 130 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 LECT2O14960 151 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 IGLV3-25P01717 112 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 BAALC-AS2P0C853 105 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 ARL14EPLP0DKL9 152 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 COX6B1P14854 86 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 KRTAP10-8P60410 259 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 FAM74A4Q5TZK3 123 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 ADM2Q7Z4H4 148 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 C1orf64Q8NEQ6 169 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 PRR15LQ9BU68 103 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 UBL5Q9BZL1 73 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 LINC00846Q9NV44 126 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 C22orf24Q9Y442 160 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 TTC28Q96AY4 2481 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 SPTBN5Q9NRC6 3674 aaKnown RBP3.36□□□□□ -1.87
VPS35-205ENST00000563984 ZNF831Q5JPB2 1677 aa3.36□□□□□ -1.87
VPS35-205ENST00000563984 MPDZO75970 2070 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 HEATR1Q9H583 2144 aaKnown RBP3.35□□□□□ -1.87
VPS35-205ENST00000563984 LAMA3Q16787 3333 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 A0A1B0GUT8 65 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 LHBP01229 141 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 TFF1P04155 84 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 CD24P25063 80 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 NREPQ16612 68 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 Q6ZQT0 140 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 NDUFA4L2Q9NRX3 87 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 DHRS4-AS1Q9P1J3 65 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 CACNA1GO43497 2377 aa3.35□□□□□ -1.87
VPS35-205ENST00000563984 ADAMTS9Q9P2N4 1935 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 PLXNB1O43157 2135 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 A0A0J9YX75 114 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 CXorf51AA0A1B0GTR3 108 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 CPSF4LA6NMK7 179 aaKnown RBP3.34□□□□□ -1.87
VPS35-205ENST00000563984 A8MU10 97 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 H7C2G1 150 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 HMGN4O00479 90 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 LYZL1Q6UWQ5 148 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 C1orf147Q96MC9 270 aaPredicted RBP3.34□□□□□ -1.87
VPS35-205ENST00000563984 OBSCN-AS1Q96MR7 158 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 LHFPL6Q9Y693 200 aa3.34□□□□□ -1.87
VPS35-205ENST00000563984 PIEZO1Q92508 2521 aa3.34□□□□□ -1.88
VPS35-205ENST00000563984 A0A087WSZ3 146 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 TRBV6-6A0A0A6YYG2 114 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 IGHV3-15A0A0B4J1V0 119 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 NDUFB1O75438 58 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 IGHV1-46P01743 117 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 IGHV3-23P01764 117 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 IGHV1-8P0DP01 117 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 IL9P15248 144 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 MIR22HGQ0VDD5 57 aa3.33□□□□□ -1.88
VPS35-205ENST00000563984 FAM27BQ5VT28 67 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms