RNA–Protein interactions for RNA: ENST00000562806.1

CHD9-207, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 400 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-207ENST00000562806 SPEF2Q9C093 1822 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 CMYA5Q8N3K9 4069 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 GCN1Q92616 2671 aaKnown RBP-0.36□□□□□ -2.47
CHD9-207ENST00000562806 ZNF609O15014 1411 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 MYOM3Q5VTT5 1437 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 PKD1P98161 4303 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 TRAV22A0A0B4J277 110 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 FAM92AA1XBS5 289 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 NPFFO15130 113 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 PIPP12273 146 aaPredicted RBP-0.36□□□□□ -2.47
CHD9-207ENST00000562806 HAMPP81172 84 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 BAGE3Q86Y29 109 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 PSMG3Q9BT73 122 aaPredicted RBP-0.36□□□□□ -2.47
CHD9-207ENST00000562806 CHD7Q9P2D1 2997 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 DOCK11Q5JSL3 2073 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 ITPR1Q14643 2758 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 WNK3Q9BYP7 1800 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 KALRNO60229 2985 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 CEP295Q9C0D2 2601 aa-0.36□□□□□ -2.47
CHD9-207ENST00000562806 DNAH5Q8TE73 4624 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SMG1Q96Q15 3661 aaKnown RBP-0.37□□□□□ -2.47
CHD9-207ENST00000562806 GVINP1Q7Z2Y8 2422 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 MTORP42345 2549 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 DOPEY2Q9Y3R5 2298 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 BCE1O60756 84 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 CBLN1P23435 193 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SPRR2BP35325 72 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 RBM3P98179 157 aaKnown RBP-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SPAG11BQ08648 103 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SCIMPQ6UWF3 145 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 PYDC1Q8WXC3 89 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SPTSSAQ969W0 71 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SDF2Q99470 211 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 AGPAT4-IT1Q9H0P7 198 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SCN3BQ9NY72 215 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 SPCS1Q9Y6A9 102 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 C2CD3Q4AC94 2353 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 KIAA0100Q14667 2235 aaKnown RBP-0.37□□□□□ -2.47
CHD9-207ENST00000562806 DNAH7Q8WXX0 4024 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 DOCK1Q14185 1865 aa-0.37□□□□□ -2.47
CHD9-207ENST00000562806 C10orf71Q711Q0 1435 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 RIF1Q5UIP0 2472 aaKnown RBP-0.38□□□□□ -2.47
CHD9-207ENST00000562806 CCDC168Q8NDH2 2452 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 ARAP2Q8WZ64 1704 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 CSPG4Q6UVK1 2322 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 SPTA1P02549 2419 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 LRRK2Q5S007 2527 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 I3L2K1 104 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 K7ERU9 68 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 M0R2Z0 102 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 SPRR2EP22531 72 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 SPRR1AP35321 89 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 CCL8P80075 99 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 DR1Q01658 176 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 ALX1Q15699 326 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 Q8IZM0 81 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 TSTD1Q8NFU3 115 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 BCL9LQ86UU0 1499 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 IFT140Q96RY7 1462 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 DNAH11Q96DT5 4516 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 BICRAQ9NZM4 1560 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 ZZEF1O43149 2961 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 RELNP78509 3460 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 SPG11Q96JI7 2443 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 UNC13AQ9UPW8 1703 aa-0.38□□□□□ -2.47
CHD9-207ENST00000562806 SPTBN1Q01082 2364 aaKnown RBP-0.39□□□□□ -2.47
CHD9-207ENST00000562806 PKDREJQ9NTG1 2253 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 CSMD1Q96PZ7 3565 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 ZNF518AQ6AHZ1 1483 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 SNCGO76070 127 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 NDUFB6O95139 128 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 S100A3P33764 101 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 SPRR2AP35326 72 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 RPS25P62851 125 aaKnown RBP-0.39□□□□□ -2.47
CHD9-207ENST00000562806 SMIM21Q3B7S5 101 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 KRTAP6-2Q3LI66 62 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 ANP32BQ92688 251 aaKnown RBP-0.39□□□□□ -2.47
CHD9-207ENST00000562806 SEC11CQ9BY50 192 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 TPT1P8Q9HAU6 139 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 NPVFQ9HCQ7 196 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 PKD1L2Q7Z442 2459 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 LRRC37A2A6NM11 1700 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 PHLPP1O60346 1717 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 FRYQ5TBA9 3013 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 URB1O60287 2271 aaKnown RBP-0.39□□□□□ -2.47
CHD9-207ENST00000562806 PAPPAQ13219 1627 aa-0.39□□□□□ -2.47
CHD9-207ENST00000562806 VPS13BQ7Z7G8 4022 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 DMXL1Q9Y485 3027 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 NBASA2RRP1 2371 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 MYH8P13535 1937 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 GRIN2AQ12879 1464 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 CFAP46Q8IYW2 2715 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 PATJQ8NI35 1801 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 LRBAP50851 2863 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 REV3LO60673 3130 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 LOC105371267A0A1B0GV96 52 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 SPAARA0A1B0GVQ0 90 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 HCG22E2RYF7 251 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 SIX6O95475 246 aa-0.4□□□□□ -2.47
CHD9-207ENST00000562806 PPP1R17O96001 155 aa-0.4□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms