RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MRPL36Q9P0J6 103 aaKnown RBP2.29□□□□□ -2.04
VPS35-203ENST00000562420 LINC00474Q9P2X8 69 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 TIMM8BQ9Y5J9 83 aaPredicted RBP2.29□□□□□ -2.04
VPS35-203ENST00000562420 IGKV1D-17A0A075B6S4 117 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 TRBV7-4A0A0J9YYF1 115 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 A6NN06 94 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 IGHV3-11P01762 117 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 TRGV3P03979 118 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 RPS27P42677 84 aaKnown RBP2.28□□□□□ -2.04
VPS35-203ENST00000562420 KRTAP10-8P60410 259 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 PRCDQ00LT1 54 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 SYCNQ0VAF6 134 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 PRR4Q16378 134 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 FAM19A3Q7Z5A8 133 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 KRTAP11-1Q8IUC1 163 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 TMEM254Q8TBM7 123 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 ITLN2Q8WWU7 325 aaPredicted RBP2.28□□□□□ -2.04
VPS35-203ENST00000562420 AMELXQ99217 191 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 CDC42SE1Q9NRR8 79 aa2.28□□□□□ -2.04
VPS35-203ENST00000562420 SHANK1Q9Y566 2161 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-72A0A0B4J1Y9 119 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1-12A0A0C4DH73 117 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 LOC101927531A0A1B0GV80 90 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 H3BSH0 61 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 BUB1B-PAK6H3BSN5 160 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1D-12P01611 117 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 SAA2P0DJI9 122 aaPredicted RBP2.27□□□□□ -2.05
VPS35-203ENST00000562420 RNASE4P34096 147 aaKnown RBP2.27□□□□□ -2.05
VPS35-203ENST00000562420 DEFB103AP81534 67 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 DEFB114Q30KQ6 69 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 PIGYQ3MUY2 71 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 SFTA2Q6UW10 78 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 LINC00322Q6ZN03 302 aaPredicted RBP2.27□□□□□ -2.05
VPS35-203ENST00000562420 GPHB5Q86YW7 130 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 LINC00337Q8N6G1 96 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 BPESC1Q9GZL8 116 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 LINC00846Q9NV44 126 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 DEC1Q9P2X7 70 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 LENEPQ9Y5L5 61 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 MYO7AQ13402 2215 aa2.27□□□□□ -2.05
VPS35-203ENST00000562420 SNRNP200O75643 2136 aaKnown RBP2.27□□□□□ -2.05
VPS35-203ENST00000562420 ARID1AO14497 2285 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 COL5A1P20908 1838 aaPredicted RBP2.26□□□□□ -2.05
VPS35-203ENST00000562420 MKI67P46013 3256 aaKnown RBP2.26□□□□□ -2.05
VPS35-203ENST00000562420 IGLV1-50A0A075B6I6 118 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1-27A0A075B6S5 117 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 TRAV22A0A0B4J277 110 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 IGHV1OR15-9A0A0B4J2B8 117 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 IGHV5-10-1A0A0J9YXX1 117 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 LY6HO94772 140 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-23P01764 117 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 CTSGP08311 255 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 LINC00313P59037 77 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 C9orf116Q5BN46 136 aaPredicted RBP2.26□□□□□ -2.05
VPS35-203ENST00000562420 CASC10Q5T4H9 136 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 PRNTQ86SH4 94 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 C14orf178Q8N769 122 aaPredicted RBP2.26□□□□□ -2.05
VPS35-203ENST00000562420 CHCHD7Q9BUK0 85 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 EML6Q6ZMW3 1958 aa2.26□□□□□ -2.05
VPS35-203ENST00000562420 EML5Q05BV3 1969 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 GOLGA4Q13439 2230 aaKnown RBP2.25□□□□□ -2.05
VPS35-203ENST00000562420 RAI1Q7Z5J4 1906 aaPredicted RBP2.25□□□□□ -2.05
VPS35-203ENST00000562420 SPTBN5Q9NRC6 3674 aaKnown RBP2.25□□□□□ -2.05
VPS35-203ENST00000562420 IGLV4-69A0A075B6H9 119 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 TRAV23DV6A0A075B6W5 121 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 LOC110117498A0A087WWA1 95 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 IGHV1-18A0A0C4DH31 117 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1-8A0A0C4DH67 115 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 TRBV6-5A0A0K0K1A5 114 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 LCE6AA0A183 80 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 E7EUB6 86 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 H3BPC8 53 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 DEFA4P12838 97 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 ZNF32P17041 273 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 CD24P25063 80 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 SPANXA2-OT1Q8N9U9 137 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 TET1Q8NFU7 2136 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 KLF14Q8TD94 323 aaPredicted RBP2.25□□□□□ -2.05
VPS35-203ENST00000562420 COX14Q96I36 57 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 PROK2Q9HC23 129 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 NDUFA12Q9UI09 145 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 LRRK1Q38SD2 2015 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 LAMA3Q16787 3333 aa2.25□□□□□ -2.05
VPS35-203ENST00000562420 FREM3P0C091 2139 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 IGHV3-21A0A0B4J1V1 117 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 IGKV1D-43A0A0B4J1Z2 117 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 IGKV3D-7A0A0C4DH55 119 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 C16orf90A8MZG2 172 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 HCG22E2RYF7 251 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 M0R1W7 72 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 IGLV1-47P01700 117 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 CRIP1P50238 77 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 PATE2Q6UY27 113 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 CLEC2BQ92478 149 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 LINC00167Q96N53 147 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 Q9BRP9 147 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 CDC42SE2Q9NRR3 84 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 ORMDL1Q9P0S3 153 aa2.24□□□□□ -2.05
VPS35-203ENST00000562420 ZNF706Q9Y5V0 76 aaPredicted RBP2.24□□□□□ -2.05
VPS35-203ENST00000562420 HEATR5BQ9P2D3 2071 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms