RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 C9orf163Q8N9P6 203 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 CLRN3Q8NCR9 226 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 CHCHD10Q8WYQ3 142 aaPredicted RBP8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 TMEM101Q96IK0 257 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 BTF3L4Q96K17 158 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 CHAC1Q9BUX1 264 aa8.07□□□□□ -1.12
PKNOX1-208ENST00000558955 SLPIP03973 132 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 FCER1GP30273 86 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 CKS2P33552 79 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 C15orf56Q8N910 161 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 OR5A1Q8NGJ0 315 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
PKNOX1-208ENST00000558955 VPS13BQ7Z7G8 4022 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 LINC00862A6NCI5 91 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 D6R8Y8 96 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 F8W036 122 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 PPP1R2P9O14990 202 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 TNFRSF6BO95407 300 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 S100A8P05109 93 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 PNRC1Q12796 327 aaPredicted RBP8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 MRPL52Q86TS9 123 aaKnown RBP8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 KIR2DL4Q99706 377 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 CDC42SE2Q9NRR3 84 aa8.05□□□□□ -1.12
PKNOX1-208ENST00000558955 TRBV24-1A0A075B6N3 115 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 LINC00959A0A1B0GUT2 108 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 NPYP01303 97 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 XCL1P47992 114 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 CNBPP62633 177 aaKnown RBP8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 FOXI1Q12951 378 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 ZNF664Q8N3J9 261 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 C20orf78Q9BR46 151 aa8.04□□□□□ -1.12
PKNOX1-208ENST00000558955 PANO1I0J062 215 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 CCL25O15444 150 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 MT-ND4LP03901 98 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 HIGD2BQ4VC39 106 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 SDIM1Q6ZPB5 146 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 ATP5L2Q7Z4Y8 100 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 AP5S1Q9NUS5 200 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 UBE2D4Q9Y2X8 147 aa8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 SRRM2Q9UQ35 2752 aaKnown RBP8.03□□□□□ -1.12
PKNOX1-208ENST00000558955 RPL32P62910 135 aaKnown RBP8.02□□□□□ -1.13
PKNOX1-208ENST00000558955 RNASE13Q5GAN3 156 aaKnown RBP8.02□□□□□ -1.13
PKNOX1-208ENST00000558955 CFAP161Q6P656 301 aa8.02□□□□□ -1.13
PKNOX1-208ENST00000558955 ANAPC16Q96DE5 110 aa8.02□□□□□ -1.13
PKNOX1-208ENST00000558955 SMIM2Q9BVW6 85 aa8.02□□□□□ -1.13
PKNOX1-208ENST00000558955 ADCYAP1P18509 176 aa8.01□□□□□ -1.13
PKNOX1-208ENST00000558955 SS18Q15532 418 aa8.01□□□□□ -1.13
PKNOX1-208ENST00000558955 CSDC2Q9Y534 153 aaKnown RBP8.01□□□□□ -1.13
PKNOX1-208ENST00000558955 TRAV16A0A0A6YYK6 109 aaPredicted RBP8□□□□□ -1.13
PKNOX1-208ENST00000558955 TCAPO15273 167 aa8□□□□□ -1.13
PKNOX1-208ENST00000558955 PPBPP02775 128 aa8□□□□□ -1.13
PKNOX1-208ENST00000558955 PLA2G1BP04054 148 aaKnown RBP8□□□□□ -1.13
PKNOX1-208ENST00000558955 RPL39P62891 51 aaKnown RBP8□□□□□ -1.13
PKNOX1-208ENST00000558955 TMEM136Q6ZRR5 245 aa8□□□□□ -1.13
PKNOX1-208ENST00000558955 Q6ZUT4 128 aa8□□□□□ -1.13
PKNOX1-208ENST00000558955 ORMDL3Q8N138 153 aa8□□□□□ -1.13
PKNOX1-208ENST00000558955 IGHV3-64A0A075B6Q5 118 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 GVQW2A0A096LPI5 108 aaPredicted RBP7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 TMEM218A2RU14 115 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 PHOX2AO14813 284 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 UQCC3Q6UW78 93 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 TMEM18Q96B42 140 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 PRELID3AQ96N28 172 aa7.99□□□□□ -1.13
PKNOX1-208ENST00000558955 TRAV13-1A0A0B4J241 112 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 CHTF8P0CG12 524 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 SMAGPQ0VAQ4 97 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 CD164L2Q6UWJ8 174 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 FAM104AQ969W3 186 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 LINC00526Q96FQ7 95 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 TIMM21Q9BVV7 248 aa7.98□□□□□ -1.13
PKNOX1-208ENST00000558955 IGHV1-58A0A0C4DH39 117 aa7.97□□□□□ -1.13
PKNOX1-208ENST00000558955 C1orf196B1AJZ1 125 aa7.97□□□□□ -1.13
PKNOX1-208ENST00000558955 KRTAP10-4P60372 401 aaPredicted RBP7.97□□□□□ -1.13
PKNOX1-208ENST00000558955 OPRPNQ99935 248 aaPredicted RBP7.97□□□□□ -1.13
PKNOX1-208ENST00000558955 LOC389332A0A1B0GUA5 103 aa7.96□□□□□ -1.14
PKNOX1-208ENST00000558955 COX6A2Q02221 97 aa7.96□□□□□ -1.14
PKNOX1-208ENST00000558955 CIRBPQ14011 172 aaKnown RBP7.96□□□□□ -1.14
PKNOX1-208ENST00000558955 COMMD7Q86VX2 200 aa7.96□□□□□ -1.14
PKNOX1-208ENST00000558955 PRSS3P2Q8NHM4 247 aa7.96□□□□□ -1.14
PKNOX1-208ENST00000558955 FLG2Q5D862 2391 aaPredicted RBP7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 PRSS47A8MTI9 375 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 RAB5AP20339 215 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 SPACA4Q8TDM5 124 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 DPH3Q96FX2 82 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 IMMP2LQ96T52 175 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 SPANXA1Q9NS26 97 aa7.95□□□□□ -1.14
PKNOX1-208ENST00000558955 MYCBP2O75592 4640 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 A0A087WYN8 130 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 COX7A2LO14548 114 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 C5orf38Q86SI9 138 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 SEC11CQ9BY50 192 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 CTDSP1Q9GZU7 261 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 MAP1LC3AQ9H492 121 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 LAMTOR2Q9Y2Q5 125 aa7.94□□□□□ -1.14
PKNOX1-208ENST00000558955 ZNF561-AS1K7EIQ3 104 aa7.93□□□□□ -1.14
PKNOX1-208ENST00000558955 MALP21145 153 aa7.93□□□□□ -1.14
PKNOX1-208ENST00000558955 RPL37AP61513 92 aaKnown RBP7.93□□□□□ -1.14
PKNOX1-208ENST00000558955 MRPS36P82909 103 aaKnown RBP7.93□□□□□ -1.14
PKNOX1-208ENST00000558955 IGLV4-69A0A075B6H9 119 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms