RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 COX19Q49B96 90 aa9□□□□□ -0.97
SHMT2-228ENST00000557302 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
SHMT2-228ENST00000557302 CDPF1Q6NVV7 123 aa9□□□□□ -0.97
SHMT2-228ENST00000557302 MRPL52Q86TS9 123 aaKnown RBP9□□□□□ -0.97
SHMT2-228ENST00000557302 OR5A1Q8NGJ0 315 aa9□□□□□ -0.97
SHMT2-228ENST00000557302 BAALCQ8WXS3 180 aa9□□□□□ -0.97
SHMT2-228ENST00000557302 IGLV10-54A0A075B6I4 117 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 LECT2O14960 151 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 WFDC2Q14508 124 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 Q8N814 137 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 TMEM18Q96B42 140 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 GNB1LQ9BYB4 327 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 MAP1LC3AQ9H492 121 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 DNAH5Q8TE73 4624 aa8.99□□□□□ -0.97
SHMT2-228ENST00000557302 LRP1BQ9NZR2 4599 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 IGKV3OR2-268A0A0C4DH90 116 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 LOC389332A0A1B0GUA5 103 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 PRSS47A8MTI9 375 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 MT-ND6P03923 174 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 RAB5AP20339 215 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 DGAT2L7PQ6IED9 249 aa8.98□□□□□ -0.97
SHMT2-228ENST00000557302 NTN5Q8WTR8 489 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-228ENST00000557302 RYR1P21817 5038 aa8.97□□□□□ -0.97
SHMT2-228ENST00000557302 FUSP35637 526 aaKnown RBP eCLIP8.97□□□□□ -0.97
SHMT2-228ENST00000557302 KIAA1644Q3SXP7 199 aa8.97□□□□□ -0.97
SHMT2-228ENST00000557302 KRTAP17-1Q9BYP8 105 aa8.97□□□□□ -0.97
SHMT2-228ENST00000557302 IGLV5-52A0A0A0MRZ9 124 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 TGIF2-C20orf24A0A0A6YYL0 155 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 KRTAP26-1Q6PEX3 210 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 Q8N8P6 123 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 CDC42SE2Q9NRR3 84 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 UBE2D4Q9Y2X8 147 aa8.96□□□□□ -0.98
SHMT2-228ENST00000557302 CSDC2Q9Y534 153 aaKnown RBP8.96□□□□□ -0.98
SHMT2-228ENST00000557302 RPL39P62891 51 aaKnown RBP8.95□□□□□ -0.98
SHMT2-228ENST00000557302 C14orf177Q52M58 125 aa8.95□□□□□ -0.98
SHMT2-228ENST00000557302 ZNF664Q8N3J9 261 aa8.95□□□□□ -0.98
SHMT2-228ENST00000557302 TIMM21Q9BVV7 248 aa8.95□□□□□ -0.98
SHMT2-228ENST00000557302 USP17L23D6RBM5 183 aa8.94□□□□□ -0.98
SHMT2-228ENST00000557302 FABP9Q0Z7S8 132 aa8.94□□□□□ -0.98
SHMT2-228ENST00000557302 CHCHD10Q8WYQ3 142 aaPredicted RBP8.94□□□□□ -0.98
SHMT2-228ENST00000557302 MRPL18Q9H0U6 180 aaKnown RBP8.94□□□□□ -0.98
SHMT2-228ENST00000557302 NXT2Q9NPJ8 142 aaKnown RBP8.94□□□□□ -0.98
SHMT2-228ENST00000557302 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.93□□□□□ -0.98
SHMT2-228ENST00000557302 GAGE12HA6NDE8 117 aa8.93□□□□□ -0.98
SHMT2-228ENST00000557302 SPANXA1Q9NS26 97 aa8.93□□□□□ -0.98
SHMT2-228ENST00000557302 LINC00959A0A1B0GUT2 108 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 K7EMI3 77 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 GCSHP23434 173 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 IFI27P40305 119 aaPredicted RBP8.92□□□□□ -0.98
SHMT2-228ENST00000557302 SS18Q15532 418 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 ORMDL2Q53FV1 153 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 Q6ZUT4 128 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 ALKBH7Q9BT30 221 aaPredicted RBP8.92□□□□□ -0.98
SHMT2-228ENST00000557302 TRAPPC1Q9Y5R8 145 aa8.92□□□□□ -0.98
SHMT2-228ENST00000557302 RNASE13Q5GAN3 156 aaKnown RBP8.91□□□□□ -0.98
SHMT2-228ENST00000557302 CCL25O15444 150 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 XCL1P47992 114 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 KRTAP10-1P60331 282 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 MRPS36P82909 103 aaKnown RBP8.9□□□□□ -0.98
SHMT2-228ENST00000557302 CBLN2Q8IUK8 224 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 PRSS3P2Q8NHM4 247 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 SMCO4Q9NRQ5 59 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 CYSLTR1Q9Y271 337 aa8.9□□□□□ -0.98
SHMT2-228ENST00000557302 TRAV13-1A0A0B4J241 112 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 C1orf196B1AJZ1 125 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 CDK2AP2O75956 126 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 PRSS1P07477 247 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 C2orf66Q6UXQ4 117 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 YPEL4Q96NS1 127 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 PYGO1Q9Y3Y4 419 aa8.89□□□□□ -0.99
SHMT2-228ENST00000557302 APOBP04114 4563 aaKnown RBP8.89□□□□□ -0.99
SHMT2-228ENST00000557302 G0S2P27469 103 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 FOXI1Q12951 378 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 CFAP161Q6P656 301 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 CD164L2Q6UWJ8 174 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 FAM104AQ969W3 186 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 OPRPNQ99935 248 aaPredicted RBP8.88□□□□□ -0.99
SHMT2-228ENST00000557302 ABCA13Q86UQ4 5058 aa8.88□□□□□ -0.99
SHMT2-228ENST00000557302 hDV102S1A0JD36 115 aa8.87□□□□□ -0.99
SHMT2-228ENST00000557302 IGLV4-3A0A075B6K6 122 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 IFITM10A6NMD0 228 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 FA2HQ7L5A8 372 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 C15orf56Q8N910 161 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 TMEM141Q96I45 108 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 AP5S1Q9NUS5 200 aa8.86□□□□□ -0.99
SHMT2-228ENST00000557302 LINC01546A6NGU7 62 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 COX7A2LO14548 114 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 NPSP0C0P6 89 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 LINC01620Q4KN68 170 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 Q6ZN92 141 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 TEX43Q6ZNM6 134 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 C18orf32Q8TCD1 76 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 TOMM6Q96B49 74 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 HSPG2P98160 4391 aa8.84□□□□□ -0.99
SHMT2-228ENST00000557302 GVQW2A0A096LPI5 108 aaPredicted RBP8.83□□□□□ -1
SHMT2-228ENST00000557302 IGHV1-58A0A0C4DH39 117 aa8.83□□□□□ -1
SHMT2-228ENST00000557302 IGIPA6NJ69 53 aa8.83□□□□□ -1
SHMT2-228ENST00000557302 MALP21145 153 aa8.83□□□□□ -1
SHMT2-228ENST00000557302 CNBPP62633 177 aaKnown RBP8.83□□□□□ -1
SHMT2-228ENST00000557302 HIGD2BQ4VC39 106 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms