RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 A0A1B0GW15 77 aa13.32□□□□□ -0.28
VTI1B-205ENST00000555543 A0A1B0GXF2 115 aa13.32□□□□□ -0.28
VTI1B-205ENST00000555543 CBLN2Q8IUK8 224 aa13.32□□□□□ -0.28
VTI1B-205ENST00000555543 SRRM2Q9UQ35 2752 aaKnown RBP13.32□□□□□ -0.28
VTI1B-205ENST00000555543 SUMO2P61956 95 aaKnown RBP13.3□□□□□ -0.28
VTI1B-205ENST00000555543 HBBP68871 147 aa13.3□□□□□ -0.28
VTI1B-205ENST00000555543 ZNF25P17030 456 aaPredicted RBP13.29□□□□□ -0.28
VTI1B-205ENST00000555543 GAGE12HA6NDE8 117 aa13.28□□□□□ -0.28
VTI1B-205ENST00000555543 VCYO14598 125 aa13.28□□□□□ -0.28
VTI1B-205ENST00000555543 PPP1R17O96001 155 aa13.28□□□□□ -0.28
VTI1B-205ENST00000555543 IMMP2LQ96T52 175 aa13.28□□□□□ -0.28
VTI1B-205ENST00000555543 SCXQ7RTU7 201 aa13.27□□□□□ -0.29
VTI1B-205ENST00000555543 CKS2P33552 79 aa13.26□□□□□ -0.29
VTI1B-205ENST00000555543 MRPL52Q86TS9 123 aaKnown RBP13.26□□□□□ -0.29
VTI1B-205ENST00000555543 CHCHD10Q8WYQ3 142 aaPredicted RBP13.26□□□□□ -0.29
VTI1B-205ENST00000555543 YPEL4Q96NS1 127 aa13.26□□□□□ -0.29
VTI1B-205ENST00000555543 TRBV24-1A0A075B6N3 115 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 hDV102S1A0JD36 115 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 D6R8Y8 96 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 S100A8P05109 93 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 FCER1GP30273 86 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 DGAT2L7PQ6IED9 249 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 C15orf56Q8N910 161 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 OR5A1Q8NGJ0 315 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 TMEM101Q96IK0 257 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 BTF3L4Q96K17 158 aa13.25□□□□□ -0.29
VTI1B-205ENST00000555543 TNFRSF6BO95407 300 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 S100PP25815 95 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 ATP5L2Q7Z4Y8 100 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 C9orf163Q8N9P6 203 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 C20orf78Q9BR46 151 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 CHAC1Q9BUX1 264 aa13.24□□□□□ -0.29
VTI1B-205ENST00000555543 COLCA2A8K830 154 aa13.23□□□□□ -0.29
VTI1B-205ENST00000555543 FAM229AH3BQW9 127 aa13.23□□□□□ -0.29
VTI1B-205ENST00000555543 KIR2DL4Q99706 377 aa13.23□□□□□ -0.29
VTI1B-205ENST00000555543 CDC42SE2Q9NRR3 84 aa13.23□□□□□ -0.29
VTI1B-205ENST00000555543 MYCBP2O75592 4640 aa13.23□□□□□ -0.29
VTI1B-205ENST00000555543 LINC00959A0A1B0GUT2 108 aa13.22□□□□□ -0.29
VTI1B-205ENST00000555543 NPYP01303 97 aa13.22□□□□□ -0.29
VTI1B-205ENST00000555543 SLPIP03973 132 aa13.22□□□□□ -0.29
VTI1B-205ENST00000555543 CNBPP62633 177 aaKnown RBP13.22□□□□□ -0.29
VTI1B-205ENST00000555543 RPL32P62910 135 aaKnown RBP13.22□□□□□ -0.29
VTI1B-205ENST00000555543 FOXI1Q12951 378 aa13.21□□□□□ -0.29
VTI1B-205ENST00000555543 LINC00528Q8N1L1 170 aa13.21□□□□□ -0.29
VTI1B-205ENST00000555543 CIRBP-AS1Q8TBR5 109 aa13.21□□□□□ -0.29
VTI1B-205ENST00000555543 SMIM2Q9BVW6 85 aa13.21□□□□□ -0.29
VTI1B-205ENST00000555543 UBE2D4Q9Y2X8 147 aa13.21□□□□□ -0.29
VTI1B-205ENST00000555543 TRAV9-1A0A075B6T8 112 aa13.2□□□□□ -0.3
VTI1B-205ENST00000555543 CCL25O15444 150 aa13.2□□□□□ -0.3
VTI1B-205ENST00000555543 INAFM2P0DMQ5 153 aa13.2□□□□□ -0.3
VTI1B-205ENST00000555543 XCL1P47992 114 aa13.2□□□□□ -0.3
VTI1B-205ENST00000555543 ZNF664Q8N3J9 261 aa13.2□□□□□ -0.3
VTI1B-205ENST00000555543 TGIF2-C20orf24A0A0A6YYL0 155 aa13.18□□□□□ -0.3
VTI1B-205ENST00000555543 PANO1I0J062 215 aa13.18□□□□□ -0.3
VTI1B-205ENST00000555543 PPBPP02775 128 aa13.18□□□□□ -0.3
VTI1B-205ENST00000555543 HIGD2BQ4VC39 106 aa13.18□□□□□ -0.3
VTI1B-205ENST00000555543 RNASE13Q5GAN3 156 aaKnown RBP13.18□□□□□ -0.3
VTI1B-205ENST00000555543 SDIM1Q6ZPB5 146 aa13.18□□□□□ -0.3
VTI1B-205ENST00000555543 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.18□□□□□ -0.3
VTI1B-205ENST00000555543 PHOX2AO14813 284 aa13.17□□□□□ -0.3
VTI1B-205ENST00000555543 ORMDL3Q8N138 153 aa13.17□□□□□ -0.3
VTI1B-205ENST00000555543 AP5S1Q9NUS5 200 aa13.17□□□□□ -0.3
VTI1B-205ENST00000555543 CSDC2Q9Y534 153 aaKnown RBP13.17□□□□□ -0.3
VTI1B-205ENST00000555543 RPL39P62891 51 aaKnown RBP13.16□□□□□ -0.3
VTI1B-205ENST00000555543 CFAP161Q6P656 301 aa13.16□□□□□ -0.3
VTI1B-205ENST00000555543 TMEM136Q6ZRR5 245 aa13.16□□□□□ -0.3
VTI1B-205ENST00000555543 Q6ZUT4 128 aa13.16□□□□□ -0.3
VTI1B-205ENST00000555543 PRELID3AQ96N28 172 aa13.16□□□□□ -0.3
VTI1B-205ENST00000555543 FLG2Q5D862 2391 aaPredicted RBP13.15□□□□□ -0.3
VTI1B-205ENST00000555543 TCAPO15273 167 aa13.15□□□□□ -0.3
VTI1B-205ENST00000555543 RAB5AP20339 215 aa13.15□□□□□ -0.3
VTI1B-205ENST00000555543 TIMM21Q9BVV7 248 aa13.15□□□□□ -0.3
VTI1B-205ENST00000555543 GVQW2A0A096LPI5 108 aaPredicted RBP13.14□□□□□ -0.31
VTI1B-205ENST00000555543 SS18Q15532 418 aa13.14□□□□□ -0.31
VTI1B-205ENST00000555543 IGHV3-64A0A075B6Q5 118 aa13.13□□□□□ -0.31
VTI1B-205ENST00000555543 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.13□□□□□ -0.31
VTI1B-205ENST00000555543 SMAGPQ0VAQ4 97 aa13.13□□□□□ -0.31
VTI1B-205ENST00000555543 CD164L2Q6UWJ8 174 aa13.13□□□□□ -0.31
VTI1B-205ENST00000555543 FAM104AQ969W3 186 aa13.13□□□□□ -0.31
VTI1B-205ENST00000555543 TMEM18Q96B42 140 aa13.13□□□□□ -0.31
VTI1B-205ENST00000555543 HERC1Q15751 4861 aa13.12□□□□□ -0.31
VTI1B-205ENST00000555543 PLA2G1BP04054 148 aaKnown RBP13.11□□□□□ -0.31
VTI1B-205ENST00000555543 TRAV13-1A0A0B4J241 112 aa13.1□□□□□ -0.31
VTI1B-205ENST00000555543 CHTF8P0CG12 524 aa13.1□□□□□ -0.31
VTI1B-205ENST00000555543 KRTAP10-4P60372 401 aaPredicted RBP13.1□□□□□ -0.31
VTI1B-205ENST00000555543 CIRBPQ14011 172 aaKnown RBP13.1□□□□□ -0.31
VTI1B-205ENST00000555543 LINC00526Q96FQ7 95 aa13.1□□□□□ -0.31
VTI1B-205ENST00000555543 OPRPNQ99935 248 aaPredicted RBP13.1□□□□□ -0.31
VTI1B-205ENST00000555543 IGHV1-58A0A0C4DH39 117 aa13.09□□□□□ -0.31
VTI1B-205ENST00000555543 C1orf196B1AJZ1 125 aa13.09□□□□□ -0.31
VTI1B-205ENST00000555543 COX19Q49B96 90 aa13.09□□□□□ -0.31
VTI1B-205ENST00000555543 SPANXA1Q9NS26 97 aa13.09□□□□□ -0.31
VTI1B-205ENST00000555543 LAMTOR2Q9Y2Q5 125 aa13.09□□□□□ -0.31
VTI1B-205ENST00000555543 LOC389332A0A1B0GUA5 103 aa13.08□□□□□ -0.32
VTI1B-205ENST00000555543 PRSS47A8MTI9 375 aa13.08□□□□□ -0.32
VTI1B-205ENST00000555543 MAP1LC3AQ9H492 121 aa13.07□□□□□ -0.32
VTI1B-205ENST00000555543 DMBT1Q9UGM3 2413 aaPredicted RBP13.06□□□□□ -0.32
VTI1B-205ENST00000555543 COX6A2Q02221 97 aa13.06□□□□□ -0.32
VTI1B-205ENST00000555543 SPACA4Q8TDM5 124 aa13.06□□□□□ -0.32
VTI1B-205ENST00000555543 COX7A2LO14548 114 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms