RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 BTF3L4Q96K17 158 aa13.26□□□□□ -0.29
FOXA1-203ENST00000553751 NPYP01303 97 aa13.25□□□□□ -0.29
FOXA1-203ENST00000553751 PPBPP02775 128 aa13.25□□□□□ -0.29
FOXA1-203ENST00000553751 CHCHD10Q8WYQ3 142 aaPredicted RBP13.24□□□□□ -0.29
FOXA1-203ENST00000553751 SMIM2Q9BVW6 85 aa13.24□□□□□ -0.29
FOXA1-203ENST00000553751 SEC11CQ9BY50 192 aa13.24□□□□□ -0.29
FOXA1-203ENST00000553751 GAGE12HA6NDE8 117 aa13.23□□□□□ -0.29
FOXA1-203ENST00000553751 PHOX2AO14813 284 aa13.23□□□□□ -0.29
FOXA1-203ENST00000553751 ORMDL3Q8N138 153 aa13.23□□□□□ -0.29
FOXA1-203ENST00000553751 CDC42SE2Q9NRR3 84 aa13.23□□□□□ -0.29
FOXA1-203ENST00000553751 CLRN3Q8NCR9 226 aa13.22□□□□□ -0.29
FOXA1-203ENST00000553751 UBE2D4Q9Y2X8 147 aa13.22□□□□□ -0.29
FOXA1-203ENST00000553751 TMEM136Q6ZRR5 245 aa13.21□□□□□ -0.29
FOXA1-203ENST00000553751 ZNF664Q8N3J9 261 aa13.21□□□□□ -0.29
FOXA1-203ENST00000553751 IMMP2LQ96T52 175 aa13.21□□□□□ -0.29
FOXA1-203ENST00000553751 TCAPO15273 167 aa13.2□□□□□ -0.3
FOXA1-203ENST00000553751 DGAT2L7PQ6IED9 249 aa13.2□□□□□ -0.3
FOXA1-203ENST00000553751 C15orf56Q8N910 161 aa13.2□□□□□ -0.3
FOXA1-203ENST00000553751 PRELID3AQ96N28 172 aa13.2□□□□□ -0.3
FOXA1-203ENST00000553751 CTDSP1Q9GZU7 261 aa13.2□□□□□ -0.3
FOXA1-203ENST00000553751 CSDC2Q9Y534 153 aaKnown RBP13.2□□□□□ -0.3
FOXA1-203ENST00000553751 LINC00959A0A1B0GUT2 108 aa13.19□□□□□ -0.3
FOXA1-203ENST00000553751 hDV102S1A0JD36 115 aa13.19□□□□□ -0.3
FOXA1-203ENST00000553751 EPM2AB3EWF7 344 aa13.19□□□□□ -0.3
FOXA1-203ENST00000553751 SMR3BP02814 79 aaPredicted RBP13.19□□□□□ -0.3
FOXA1-203ENST00000553751 VPS13BQ7Z7G8 4022 aa13.18□□□□□ -0.3
FOXA1-203ENST00000553751 CNBPP62633 177 aaKnown RBP13.18□□□□□ -0.3
FOXA1-203ENST00000553751 FOXI1Q12951 378 aa13.18□□□□□ -0.3
FOXA1-203ENST00000553751 XCL1P47992 114 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 SMAGPQ0VAQ4 97 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 C10orf91Q5T1B1 145 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 Q5VSD8 79 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 C9orf163Q8N9P6 203 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 TMEM18Q96B42 140 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 TIMM21Q9BVV7 248 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 LAMTOR2Q9Y2Q5 125 aa13.17□□□□□ -0.3
FOXA1-203ENST00000553751 CCL25O15444 150 aa13.16□□□□□ -0.3
FOXA1-203ENST00000553751 RPL39P62891 51 aaKnown RBP13.16□□□□□ -0.3
FOXA1-203ENST00000553751 SCXQ7RTU7 201 aa13.16□□□□□ -0.3
FOXA1-203ENST00000553751 PRSS47A8MTI9 375 aa13.15□□□□□ -0.3
FOXA1-203ENST00000553751 SLPIP03973 132 aa13.15□□□□□ -0.3
FOXA1-203ENST00000553751 RNASE13Q5GAN3 156 aaKnown RBP13.15□□□□□ -0.3
FOXA1-203ENST00000553751 Q6ZUT4 128 aa13.15□□□□□ -0.3
FOXA1-203ENST00000553751 CARHSP1Q9Y2V2 147 aaKnown RBP13.15□□□□□ -0.3
FOXA1-203ENST00000553751 TRAV9-1A0A075B6T8 112 aa13.14□□□□□ -0.31
FOXA1-203ENST00000553751 SS18Q15532 418 aa13.14□□□□□ -0.31
FOXA1-203ENST00000553751 CFAP161Q6P656 301 aa13.14□□□□□ -0.31
FOXA1-203ENST00000553751 CHAC1Q9BUX1 264 aa13.14□□□□□ -0.31
FOXA1-203ENST00000553751 FAM104AQ969W3 186 aa13.13□□□□□ -0.31
FOXA1-203ENST00000553751 AP5S1Q9NUS5 200 aa13.13□□□□□ -0.31
FOXA1-203ENST00000553751 GVQW2A0A096LPI5 108 aaPredicted RBP13.12□□□□□ -0.31
FOXA1-203ENST00000553751 HIGD2BQ4VC39 106 aa13.12□□□□□ -0.31
FOXA1-203ENST00000553751 CD164L2Q6UWJ8 174 aa13.12□□□□□ -0.31
FOXA1-203ENST00000553751 MAP1LC3AQ9H492 121 aa13.12□□□□□ -0.31
FOXA1-203ENST00000553751 SPANXA1Q9NS26 97 aa13.12□□□□□ -0.31
FOXA1-203ENST00000553751 RAB5AP20339 215 aa13.11□□□□□ -0.31
FOXA1-203ENST00000553751 LOC389332A0A1B0GUA5 103 aa13.1□□□□□ -0.31
FOXA1-203ENST00000553751 C1orf196B1AJZ1 125 aa13.1□□□□□ -0.31
FOXA1-203ENST00000553751 RHEBQ15382 184 aa13.1□□□□□ -0.31
FOXA1-203ENST00000553751 SDIM1Q6ZPB5 146 aa13.1□□□□□ -0.31
FOXA1-203ENST00000553751 CIRBP-AS1Q8TBR5 109 aa13.1□□□□□ -0.31
FOXA1-203ENST00000553751 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.09□□□□□ -0.31
FOXA1-203ENST00000553751 TRAV13-1A0A0B4J241 112 aa13.09□□□□□ -0.31
FOXA1-203ENST00000553751 FAM229AH3BQW9 127 aa13.09□□□□□ -0.31
FOXA1-203ENST00000553751 S100PP25815 95 aa13.09□□□□□ -0.31
FOXA1-203ENST00000553751 Q8N8P6 123 aa13.09□□□□□ -0.31
FOXA1-203ENST00000553751 SRRM2Q9UQ35 2752 aaKnown RBP13.09□□□□□ -0.31
FOXA1-203ENST00000553751 MRPS36P82909 103 aaKnown RBP13.08□□□□□ -0.32
FOXA1-203ENST00000553751 OPRPNQ99935 248 aaPredicted RBP13.08□□□□□ -0.32
FOXA1-203ENST00000553751 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.08□□□□□ -0.32
FOXA1-203ENST00000553751 IGHV3-64A0A075B6Q5 118 aa13.07□□□□□ -0.32
FOXA1-203ENST00000553751 IGHV1-58A0A0C4DH39 117 aa13.07□□□□□ -0.32
FOXA1-203ENST00000553751 PANO1I0J062 215 aa13.07□□□□□ -0.32
FOXA1-203ENST00000553751 LINC00528Q8N1L1 170 aa13.07□□□□□ -0.32
FOXA1-203ENST00000553751 RPS10P5Q9NQ39 176 aa13.06□□□□□ -0.32
FOXA1-203ENST00000553751 IFI27P40305 119 aaPredicted RBP13.05□□□□□ -0.32
FOXA1-203ENST00000553751 KIAA1644Q3SXP7 199 aa13.05□□□□□ -0.32
FOXA1-203ENST00000553751 GNB1LQ9BYB4 327 aa13.05□□□□□ -0.32
FOXA1-203ENST00000553751 PYGO1Q9Y3Y4 419 aa13.05□□□□□ -0.32
FOXA1-203ENST00000553751 CIRBPQ14011 172 aaKnown RBP13.04□□□□□ -0.32
FOXA1-203ENST00000553751 K7EMI3 77 aa13.03□□□□□ -0.32
FOXA1-203ENST00000553751 COX7A2LO14548 114 aa13.03□□□□□ -0.32
FOXA1-203ENST00000553751 INAFM2P0DMQ5 153 aa13.03□□□□□ -0.32
FOXA1-203ENST00000553751 LINC00526Q96FQ7 95 aa13.03□□□□□ -0.32
FOXA1-203ENST00000553751 NXT2Q9NPJ8 142 aaKnown RBP13.03□□□□□ -0.32
FOXA1-203ENST00000553751 IGLV4-3A0A075B6K6 122 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 IFITM10A6NMD0 228 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 APOC3P02656 99 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 MALP21145 153 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 ORMDL2Q53FV1 153 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 C2orf66Q6UXQ4 117 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 CYSLTR1Q9Y271 337 aa13.02□□□□□ -0.33
FOXA1-203ENST00000553751 COX19Q49B96 90 aa13.01□□□□□ -0.33
FOXA1-203ENST00000553751 C5orf38Q86SI9 138 aa13□□□□□ -0.33
FOXA1-203ENST00000553751 ZNF561-AS1K7EIQ3 104 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 MT-ND6P03923 174 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 PLA2G1BP04054 148 aaKnown RBP12.99□□□□□ -0.33
FOXA1-203ENST00000553751 CHTF8P0CG12 524 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 COX6A2Q02221 97 aa12.99□□□□□ -0.33
FOXA1-203ENST00000553751 SPACA4Q8TDM5 124 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms