RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CLRN3Q8NCR9 226 aa11.61□□□□□ -0.55
SHMT2-206ENST00000553529 MRAP2Q96G30 205 aa11.61□□□□□ -0.55
SHMT2-206ENST00000553529 NAT8BQ9UHF3 227 aa11.61□□□□□ -0.55
SHMT2-206ENST00000553529 TRBV27A0A0K0K1C4 114 aa11.6□□□□□ -0.55
SHMT2-206ENST00000553529 LINC00959A0A1B0GUT2 108 aa11.6□□□□□ -0.55
SHMT2-206ENST00000553529 CCL25O15444 150 aa11.6□□□□□ -0.55
SHMT2-206ENST00000553529 PEA15Q15121 130 aa11.6□□□□□ -0.55
SHMT2-206ENST00000553529 COMMD7Q86VX2 200 aa11.6□□□□□ -0.55
SHMT2-206ENST00000553529 FAM104BQ5XKR9 115 aa11.59□□□□□ -0.55
SHMT2-206ENST00000553529 OR5A1Q8NGJ0 315 aa11.59□□□□□ -0.55
SHMT2-206ENST00000553529 DMBT1Q9UGM3 2413 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-206ENST00000553529 H7C423 109 aa11.58□□□□□ -0.56
SHMT2-206ENST00000553529 RPL37AP61513 92 aaKnown RBP11.58□□□□□ -0.56
SHMT2-206ENST00000553529 PRSS3P2Q8NHM4 247 aa11.58□□□□□ -0.56
SHMT2-206ENST00000553529 CDC42SE2Q9NRR3 84 aa11.58□□□□□ -0.56
SHMT2-206ENST00000553529 C7orf77A4D0Y5 90 aa11.57□□□□□ -0.56
SHMT2-206ENST00000553529 LINC00862A6NCI5 91 aa11.57□□□□□ -0.56
SHMT2-206ENST00000553529 J3QL48 77 aa11.57□□□□□ -0.56
SHMT2-206ENST00000553529 SUMO2P61956 95 aaKnown RBP11.57□□□□□ -0.56
SHMT2-206ENST00000553529 COX6A2Q02221 97 aa11.57□□□□□ -0.56
SHMT2-206ENST00000553529 CIRBPQ14011 172 aaKnown RBP11.57□□□□□ -0.56
SHMT2-206ENST00000553529 AP5S1Q9NUS5 200 aa11.57□□□□□ -0.56
SHMT2-206ENST00000553529 IGHV3-64A0A075B6Q5 118 aa11.56□□□□□ -0.56
SHMT2-206ENST00000553529 A0A087WYN8 130 aa11.56□□□□□ -0.56
SHMT2-206ENST00000553529 ZNF25P17030 456 aaPredicted RBP11.56□□□□□ -0.56
SHMT2-206ENST00000553529 Q6ZUT4 128 aa11.56□□□□□ -0.56
SHMT2-206ENST00000553529 SPACA4Q8TDM5 124 aa11.56□□□□□ -0.56
SHMT2-206ENST00000553529 UBE2D4Q9Y2X8 147 aa11.56□□□□□ -0.56
SHMT2-206ENST00000553529 GVQW2A0A096LPI5 108 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-206ENST00000553529 IGKV2-24A0A0C4DH68 120 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 A0A1B0GXF2 115 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 NPYP01303 97 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 RPL39P62891 51 aaKnown RBP11.55□□□□□ -0.56
SHMT2-206ENST00000553529 MRPL52Q86TS9 123 aaKnown RBP11.55□□□□□ -0.56
SHMT2-206ENST00000553529 ZNF664Q8N3J9 261 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 FAM104AQ969W3 186 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 TMEM101Q96IK0 257 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 BTF3L4Q96K17 158 aa11.55□□□□□ -0.56
SHMT2-206ENST00000553529 OPRPNQ99935 248 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-206ENST00000553529 KRTAP29-1A8MX34 341 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-206ENST00000553529 D6R8Y8 96 aa11.54□□□□□ -0.56
SHMT2-206ENST00000553529 VCYO14598 125 aa11.54□□□□□ -0.56
SHMT2-206ENST00000553529 FCER1GP30273 86 aa11.54□□□□□ -0.56
SHMT2-206ENST00000553529 A0A096LNI7 61 aa11.53□□□□□ -0.56
SHMT2-206ENST00000553529 TCAPO15273 167 aa11.52□□□□□ -0.57
SHMT2-206ENST00000553529 TNFRSF6BO95407 300 aa11.52□□□□□ -0.57
SHMT2-206ENST00000553529 CKS2P33552 79 aa11.52□□□□□ -0.57
SHMT2-206ENST00000553529 UQCC3Q6UW78 93 aa11.52□□□□□ -0.57
SHMT2-206ENST00000553529 SLC7A5P1Q8MH63 180 aa11.52□□□□□ -0.57
SHMT2-206ENST00000553529 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-206ENST00000553529 HBBP68871 147 aa11.51□□□□□ -0.57
SHMT2-206ENST00000553529 DPH3Q96FX2 82 aa11.51□□□□□ -0.57
SHMT2-206ENST00000553529 TRAV13-1A0A0B4J241 112 aa11.5□□□□□ -0.57
SHMT2-206ENST00000553529 MAJINQ3KP22 176 aa11.5□□□□□ -0.57
SHMT2-206ENST00000553529 CFAP161Q6P656 301 aa11.5□□□□□ -0.57
SHMT2-206ENST00000553529 SMDT1Q9H4I9 107 aa11.5□□□□□ -0.57
SHMT2-206ENST00000553529 SS18Q15532 418 aa11.49□□□□□ -0.57
SHMT2-206ENST00000553529 SMIM2Q9BVW6 85 aa11.49□□□□□ -0.57
SHMT2-206ENST00000553529 PHOX2AO14813 284 aa11.48□□□□□ -0.57
SHMT2-206ENST00000553529 CD164L2Q6UWJ8 174 aa11.48□□□□□ -0.57
SHMT2-206ENST00000553529 C5orf38Q86SI9 138 aa11.48□□□□□ -0.57
SHMT2-206ENST00000553529 KIR2DL4Q99706 377 aa11.48□□□□□ -0.57
SHMT2-206ENST00000553529 TRBV24-1A0A075B6N3 115 aa11.47□□□□□ -0.57
SHMT2-206ENST00000553529 IGHV1-58A0A0C4DH39 117 aa11.47□□□□□ -0.57
SHMT2-206ENST00000553529 PLAC8Q9NZF1 115 aa11.47□□□□□ -0.57
SHMT2-206ENST00000553529 IGLV4-69A0A075B6H9 119 aa11.46□□□□□ -0.57
SHMT2-206ENST00000553529 C20orf78Q9BR46 151 aa11.46□□□□□ -0.57
SHMT2-206ENST00000553529 PPP1R2P9O14990 202 aa11.45□□□□□ -0.58
SHMT2-206ENST00000553529 ADCYAP1P18509 176 aa11.45□□□□□ -0.58
SHMT2-206ENST00000553529 Q6ZRU5 148 aa11.45□□□□□ -0.58
SHMT2-206ENST00000553529 STPG4Q8N801 248 aa11.45□□□□□ -0.58
SHMT2-206ENST00000553529 CARD19Q96LW7 228 aa11.45□□□□□ -0.58
SHMT2-206ENST00000553529 A0A1B0GW15 77 aa11.44□□□□□ -0.58
SHMT2-206ENST00000553529 PPP1R17O96001 155 aa11.44□□□□□ -0.58
SHMT2-206ENST00000553529 ZC2HC1BQ5TFG8 222 aa11.44□□□□□ -0.58
SHMT2-206ENST00000553529 CSDC2Q9Y534 153 aaKnown RBP11.44□□□□□ -0.58
SHMT2-206ENST00000553529 A0A0J9YXV3 536 aa11.43□□□□□ -0.58
SHMT2-206ENST00000553529 LOC389332A0A1B0GUA5 103 aa11.43□□□□□ -0.58
SHMT2-206ENST00000553529 F8W036 122 aa11.43□□□□□ -0.58
SHMT2-206ENST00000553529 ATP6V1G1O75348 118 aa11.43□□□□□ -0.58
SHMT2-206ENST00000553529 TMEM218A2RU14 115 aa11.42□□□□□ -0.58
SHMT2-206ENST00000553529 RPL32P62910 135 aaKnown RBP11.42□□□□□ -0.58
SHMT2-206ENST00000553529 SYCNQ0VAF6 134 aa11.42□□□□□ -0.58
SHMT2-206ENST00000553529 PRELID3AQ96N28 172 aa11.42□□□□□ -0.58
SHMT2-206ENST00000553529 C1orf196B1AJZ1 125 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 ZNF561-AS1K7EIQ3 104 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 COX7A2LO14548 114 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 ODF1Q14990 250 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 TMEM136Q6ZRR5 245 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 TIMM21Q9BVV7 248 aa11.41□□□□□ -0.58
SHMT2-206ENST00000553529 MT1HL1P0DM35 61 aa11.4□□□□□ -0.58
SHMT2-206ENST00000553529 MALP21145 153 aa11.4□□□□□ -0.58
SHMT2-206ENST00000553529 ORMDL3Q8N138 153 aa11.4□□□□□ -0.58
SHMT2-206ENST00000553529 S100A1P23297 94 aa11.39□□□□□ -0.59
SHMT2-206ENST00000553529 GAGE2BQ13066 116 aa11.39□□□□□ -0.59
SHMT2-206ENST00000553529 HMCN2Q8NDA2 5059 aa11.39□□□□□ -0.59
SHMT2-206ENST00000553529 OXTP01178 125 aa11.38□□□□□ -0.59
SHMT2-206ENST00000553529 S100A8P05109 93 aa11.38□□□□□ -0.59
SHMT2-206ENST00000553529 ATP5L2Q7Z4Y8 100 aa11.38□□□□□ -0.59
SHMT2-206ENST00000553529 SEC11CQ9BY50 192 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms