RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 C15orf56Q8N910 161 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 OR5A1Q8NGJ0 315 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 CHCHD10Q8WYQ3 142 aaPredicted RBP9.16□□□□□ -0.94
USP28-209ENST00000540925 CHAC1Q9BUX1 264 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 CDC42SE2Q9NRR3 84 aa9.16□□□□□ -0.94
USP28-209ENST00000540925 GAGE12HA6NDE8 117 aa9.15□□□□□ -0.94
USP28-209ENST00000540925 F8W036 122 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 TNFRSF6BO95407 300 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 ADCYAP1P18509 176 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 CKS2P33552 79 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 FOXI1Q12951 378 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 CIRBP-AS1Q8TBR5 109 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 ANAPC16Q96DE5 110 aa9.14□□□□□ -0.95
USP28-209ENST00000540925 CSDC2Q9Y534 153 aaKnown RBP9.14□□□□□ -0.95
USP28-209ENST00000540925 IGKV3OR2-268A0A0C4DH90 116 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 LINC00959A0A1B0GUT2 108 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 D6R8Y8 96 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 FAM229AH3BQW9 127 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 PHOX2AO14813 284 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 SDIM1Q6ZPB5 146 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 ZNF664Q8N3J9 261 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 TMEM101Q96IK0 257 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 KIR2DL4Q99706 377 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 UBE2D4Q9Y2X8 147 aa9.13□□□□□ -0.95
USP28-209ENST00000540925 hDV102S1A0JD36 115 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 NPYP01303 97 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 PPBPP02775 128 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 MT-ND4LP03901 98 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 FCER1GP30273 86 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 KRTAP10-4P60372 401 aaPredicted RBP9.12□□□□□ -0.95
USP28-209ENST00000540925 UQCC3Q6UW78 93 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 FAM104AQ969W3 186 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 BTF3L4Q96K17 158 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 SMIM2Q9BVW6 85 aa9.12□□□□□ -0.95
USP28-209ENST00000540925 UBR4Q5T4S7 5183 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 GVQW2A0A096LPI5 108 aaPredicted RBP9.11□□□□□ -0.95
USP28-209ENST00000540925 PANO1I0J062 215 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 INAFM2P0DMQ5 153 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 CIRBPQ14011 172 aaKnown RBP9.11□□□□□ -0.95
USP28-209ENST00000540925 LINC00528Q8N1L1 170 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 TIMM21Q9BVV7 248 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.11□□□□□ -0.95
USP28-209ENST00000540925 FAT3Q8TDW7 4589 aa9.11□□□□□ -0.95
USP28-209ENST00000540925 TMEM218A2RU14 115 aa9.1□□□□□ -0.95
USP28-209ENST00000540925 TCAPO15273 167 aa9.1□□□□□ -0.95
USP28-209ENST00000540925 CFAP161Q6P656 301 aa9.1□□□□□ -0.95
USP28-209ENST00000540925 PRSS47A8MTI9 375 aa9.09□□□□□ -0.95
USP28-209ENST00000540925 CCL25O15444 150 aa9.09□□□□□ -0.95
USP28-209ENST00000540925 XCL1P47992 114 aa9.09□□□□□ -0.95
USP28-209ENST00000540925 ORMDL3Q8N138 153 aa9.09□□□□□ -0.95
USP28-209ENST00000540925 LRP1Q07954 4544 aaKnown RBP9.08□□□□□ -0.96
USP28-209ENST00000540925 CD164L2Q6UWJ8 174 aa9.08□□□□□ -0.96
USP28-209ENST00000540925 TMEM136Q6ZRR5 245 aa9.08□□□□□ -0.96
USP28-209ENST00000540925 IMMP2LQ96T52 175 aa9.08□□□□□ -0.96
USP28-209ENST00000540925 FLG2Q5D862 2391 aaPredicted RBP9.08□□□□□ -0.96
USP28-209ENST00000540925 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.07□□□□□ -0.96
USP28-209ENST00000540925 RPL39P62891 51 aaKnown RBP9.07□□□□□ -0.96
USP28-209ENST00000540925 SMAGPQ0VAQ4 97 aa9.07□□□□□ -0.96
USP28-209ENST00000540925 Q6ZUT4 128 aa9.07□□□□□ -0.96
USP28-209ENST00000540925 PRELID3AQ96N28 172 aa9.07□□□□□ -0.96
USP28-209ENST00000540925 AP5S1Q9NUS5 200 aa9.07□□□□□ -0.96
USP28-209ENST00000540925 LAMTOR2Q9Y2Q5 125 aa9.07□□□□□ -0.96
USP28-209ENST00000540925 IGHV3-64A0A075B6Q5 118 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 C1orf196B1AJZ1 125 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 SS18Q15532 418 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 HIGD2BQ4VC39 106 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 TMEM18Q96B42 140 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 SEC11CQ9BY50 192 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 SPANXA1Q9NS26 97 aa9.06□□□□□ -0.96
USP28-209ENST00000540925 IGHV1-58A0A0C4DH39 117 aa9.05□□□□□ -0.96
USP28-209ENST00000540925 PLA2G1BP04054 148 aaKnown RBP9.05□□□□□ -0.96
USP28-209ENST00000540925 MRPS36P82909 103 aaKnown RBP9.05□□□□□ -0.96
USP28-209ENST00000540925 RNASE13Q5GAN3 156 aaKnown RBP9.05□□□□□ -0.96
USP28-209ENST00000540925 C10orf91Q5T1B1 145 aa9.05□□□□□ -0.96
USP28-209ENST00000540925 SPACA4Q8TDM5 124 aa9.04□□□□□ -0.96
USP28-209ENST00000540925 CTDSP1Q9GZU7 261 aa9.04□□□□□ -0.96
USP28-209ENST00000540925 TRAV9-1A0A075B6T8 112 aa9.03□□□□□ -0.96
USP28-209ENST00000540925 COMMD7Q86VX2 200 aa9.03□□□□□ -0.96
USP28-209ENST00000540925 TRAV13-1A0A0B4J241 112 aa9.02□□□□□ -0.97
USP28-209ENST00000540925 CHTF8P0CG12 524 aa9.02□□□□□ -0.97
USP28-209ENST00000540925 OPRPNQ99935 248 aaPredicted RBP9.02□□□□□ -0.97
USP28-209ENST00000540925 PYGO1Q9Y3Y4 419 aa9.02□□□□□ -0.97
USP28-209ENST00000540925 COX7A2LO14548 114 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 COX6A2Q02221 97 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 Q8N8P6 123 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 PRSS3P2Q8NHM4 247 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 LINC00526Q96FQ7 95 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 MAP1LC3AQ9H492 121 aa9.01□□□□□ -0.97
USP28-209ENST00000540925 PLAC8Q9NZF1 115 aa9□□□□□ -0.97
USP28-209ENST00000540925 CARHSP1Q9Y2V2 147 aaKnown RBP9□□□□□ -0.97
USP28-209ENST00000540925 IGLV4-3A0A075B6K6 122 aa8.99□□□□□ -0.97
USP28-209ENST00000540925 A0A087WYN8 130 aa8.99□□□□□ -0.97
USP28-209ENST00000540925 IGHV3OR16-9A0A0B4J2B5 98 aa8.99□□□□□ -0.97
USP28-209ENST00000540925 LOC389332A0A1B0GUA5 103 aa8.99□□□□□ -0.97
USP28-209ENST00000540925 RAB5AP20339 215 aa8.99□□□□□ -0.97
USP28-209ENST00000540925 K7EMI3 77 aa8.98□□□□□ -0.97
USP28-209ENST00000540925 IGLV4-69A0A075B6H9 119 aa8.97□□□□□ -0.97
USP28-209ENST00000540925 ZNF561-AS1K7EIQ3 104 aa8.97□□□□□ -0.97
USP28-209ENST00000540925 IFI27P40305 119 aaPredicted RBP8.97□□□□□ -0.97
USP28-209ENST00000540925 SYCNQ0VAF6 134 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms