RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 KIR2DL4Q99706 377 aa7.67□□□□□ -1.18
SYNE1-238ENST00000540663 FAT1Q14517 4588 aa7.67□□□□□ -1.18
SYNE1-238ENST00000540663 TRBV24-1A0A075B6N3 115 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 hDV102S1A0JD36 115 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 GAGE12HA6NDE8 117 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 PPBPP02775 128 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 MT-ND4LP03901 98 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 CKS2P33552 79 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 MRPL54Q6P161 138 aaKnown RBP7.66□□□□□ -1.18
SYNE1-238ENST00000540663 CHCHD10Q8WYQ3 142 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-238ENST00000540663 AP5S1Q9NUS5 200 aa7.66□□□□□ -1.18
SYNE1-238ENST00000540663 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-238ENST00000540663 IGKV3OR2-268A0A0C4DH90 116 aa7.65□□□□□ -1.18
SYNE1-238ENST00000540663 PHOX2AO14813 284 aa7.65□□□□□ -1.18
SYNE1-238ENST00000540663 INAFM2P0DMQ5 153 aa7.65□□□□□ -1.18
SYNE1-238ENST00000540663 SCXQ7RTU7 201 aa7.65□□□□□ -1.18
SYNE1-238ENST00000540663 ANAPC16Q96DE5 110 aa7.65□□□□□ -1.18
SYNE1-238ENST00000540663 CSDC2Q9Y534 153 aaKnown RBP7.65□□□□□ -1.18
SYNE1-238ENST00000540663 PLA2G1BP04054 148 aaKnown RBP7.64□□□□□ -1.19
SYNE1-238ENST00000540663 TMEM18Q96B42 140 aa7.64□□□□□ -1.19
SYNE1-238ENST00000540663 CDC42SE2Q9NRR3 84 aa7.64□□□□□ -1.19
SYNE1-238ENST00000540663 LINC00959A0A1B0GUT2 108 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 D6R8Y8 96 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 CCL25O15444 150 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 TNFRSF6BO95407 300 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 SS18Q15532 418 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 UQCC3Q6UW78 93 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 LINC00528Q8N1L1 170 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 ZNF664Q8N3J9 261 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 C15orf56Q8N910 161 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 TIMM21Q9BVV7 248 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 SMIM2Q9BVW6 85 aa7.63□□□□□ -1.19
SYNE1-238ENST00000540663 IGHV3-64A0A075B6Q5 118 aa7.62□□□□□ -1.19
SYNE1-238ENST00000540663 FOXI1Q12951 378 aa7.62□□□□□ -1.19
SYNE1-238ENST00000540663 ORMDL3Q8N138 153 aa7.62□□□□□ -1.19
SYNE1-238ENST00000540663 CIRBP-AS1Q8TBR5 109 aa7.62□□□□□ -1.19
SYNE1-238ENST00000540663 GVQW2A0A096LPI5 108 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-238ENST00000540663 XCL1P47992 114 aa7.61□□□□□ -1.19
SYNE1-238ENST00000540663 SDIM1Q6ZPB5 146 aa7.61□□□□□ -1.19
SYNE1-238ENST00000540663 LAMTOR2Q9Y2Q5 125 aa7.61□□□□□ -1.19
SYNE1-238ENST00000540663 UBE2D4Q9Y2X8 147 aa7.61□□□□□ -1.19
SYNE1-238ENST00000540663 IGHV1-58A0A0C4DH39 117 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 C1orf196B1AJZ1 125 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 NPYP01303 97 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 IFITM2Q01629 132 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 CD164L2Q6UWJ8 174 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 TMEM136Q6ZRR5 245 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 PRELID3AQ96N28 172 aa7.6□□□□□ -1.19
SYNE1-238ENST00000540663 SLPIP03973 132 aa7.59□□□□□ -1.19
SYNE1-238ENST00000540663 CIRBPQ14011 172 aaKnown RBP7.59□□□□□ -1.19
SYNE1-238ENST00000540663 IMMP2LQ96T52 175 aa7.59□□□□□ -1.19
SYNE1-238ENST00000540663 SPANXA1Q9NS26 97 aa7.59□□□□□ -1.19
SYNE1-238ENST00000540663 DMBT1Q9UGM3 2413 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-238ENST00000540663 TMEM218A2RU14 115 aa7.58□□□□□ -1.2
SYNE1-238ENST00000540663 HIGD2BQ4VC39 106 aa7.58□□□□□ -1.2
SYNE1-238ENST00000540663 PKIGQ9Y2B9 76 aa7.58□□□□□ -1.2
SYNE1-238ENST00000540663 MYCBP2O75592 4640 aa7.58□□□□□ -1.2
SYNE1-238ENST00000540663 PRSS47A8MTI9 375 aa7.57□□□□□ -1.2
SYNE1-238ENST00000540663 RAB5AP20339 215 aa7.57□□□□□ -1.2
SYNE1-238ENST00000540663 MRPS36P82909 103 aaKnown RBP7.57□□□□□ -1.2
SYNE1-238ENST00000540663 Q6ZUT4 128 aa7.57□□□□□ -1.2
SYNE1-238ENST00000540663 CTDSP1Q9GZU7 261 aa7.57□□□□□ -1.2
SYNE1-238ENST00000540663 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-238ENST00000540663 TRAV9-1A0A075B6T8 112 aa7.56□□□□□ -1.2
SYNE1-238ENST00000540663 COX7A2LO14548 114 aa7.56□□□□□ -1.2
SYNE1-238ENST00000540663 ADCYAP1P18509 176 aa7.56□□□□□ -1.2
SYNE1-238ENST00000540663 RPL39P62891 51 aaKnown RBP7.56□□□□□ -1.2
SYNE1-238ENST00000540663 SEC11CQ9BY50 192 aa7.56□□□□□ -1.2
SYNE1-238ENST00000540663 MAP1LC3AQ9H492 121 aa7.56□□□□□ -1.2
SYNE1-238ENST00000540663 FLG2Q5D862 2391 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-238ENST00000540663 TRAV13-1A0A0B4J241 112 aa7.55□□□□□ -1.2
SYNE1-238ENST00000540663 PANO1I0J062 215 aa7.55□□□□□ -1.2
SYNE1-238ENST00000540663 ZNF561-AS1K7EIQ3 104 aa7.55□□□□□ -1.2
SYNE1-238ENST00000540663 MALP21145 153 aa7.55□□□□□ -1.2
SYNE1-238ENST00000540663 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
SYNE1-238ENST00000540663 SPACA4Q8TDM5 124 aa7.55□□□□□ -1.2
SYNE1-238ENST00000540663 K7EMI3 77 aa7.54□□□□□ -1.2
SYNE1-238ENST00000540663 COMMD7Q86VX2 200 aa7.54□□□□□ -1.2
SYNE1-238ENST00000540663 PYGO1Q9Y3Y4 419 aa7.54□□□□□ -1.2
SYNE1-238ENST00000540663 APOMO95445 188 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 IFI27P40305 119 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-238ENST00000540663 KRTAP10-4P60372 401 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-238ENST00000540663 RPL37AP61513 92 aaKnown RBP7.53□□□□□ -1.2
SYNE1-238ENST00000540663 COX6A2Q02221 97 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 Q8N8P6 123 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 DPH3Q96FX2 82 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 CARD19Q96LW7 228 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 LINC00474Q9P2X8 69 aa7.53□□□□□ -1.2
SYNE1-238ENST00000540663 LOC389332A0A1B0GUA5 103 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 IFITM10A6NMD0 228 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 S100PP25815 95 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 SYCNQ0VAF6 134 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 ORMDL2Q53FV1 153 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 FAM104AQ969W3 186 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 NXT2Q9NPJ8 142 aaKnown RBP7.52□□□□□ -1.21
SYNE1-238ENST00000540663 PLAC8Q9NZF1 115 aa7.52□□□□□ -1.21
SYNE1-238ENST00000540663 A0A087WYN8 130 aa7.51□□□□□ -1.21
SYNE1-238ENST00000540663 NPSP0C0P6 89 aa7.51□□□□□ -1.21
SYNE1-238ENST00000540663 CHTF8P0CG12 524 aa7.51□□□□□ -1.21
SYNE1-238ENST00000540663 OR10D4PQ8NGN7 298 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms